Locus 4467

Sequence ID 2L_DroMel_CAF1
Location 12,808,661 – 12,808,781
Length 120
Max. P 0.984022
window7027

overview

Window 7

Location 12,808,661 – 12,808,781
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.41
Mean single sequence MFE -27.02
Consensus MFE -26.48
Energy contribution -26.32
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -1.48
Structure conservation index 0.98
SVM decision value 1.96
SVM RNA-class probability 0.984022
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12808661 120 + 22407834
AUCGGCCGGCGGGGUAUGUCUUAAUUCUAUUUAAUGGCAUGCCAUGGUUAUAAACUGUAAAUGGUUUAAUUGUUAGGCACCCAGCAACAGCAAAAAAAAAAAAAAUAUAUUGCCAAUAAA
.......(((((((((((((((((......)))).)))))))).......((((((......)))))).(((((..((.....))...)))))................)))))...... ( -26.40)
>DroSec_CAF1 74411 111 + 1
AUCGGGCGGCGGGGUAUGUCUUAAUUCUAUUUAAUGGCAUGCCAUGGUUAUAAACUGUAAAUGGUUUAAUUGUUAGGCACCCAGCAACAGCAAAAAA---------AUUUUGCCAAUAAA
...(((.(.(..((((((((((((......)))).)))))))).......((((((......)))))).......).).))).......(((((...---------..)))))....... ( -27.50)
>DroSim_CAF1 77659 111 + 1
AUCGGGCGGCGGGGUAUGUCUUAAUUCUAUUUAAUGGCAUGCCAUGGUUAUAAACUGUAAAUGGUUUAAUUGUUAGGCACCCAGCAACAGCAAAAAA---------AUAUUGCCAAUAAA
.......(((((((((((((((((......)))).)))))))).......((((((......)))))).(((((..((.....))...)))))....---------...)))))...... ( -26.40)
>DroEre_CAF1 77785 109 + 1
AUCGGGCGGCGGGGUAUGUCUUAAUUCUAUUUAAUGGCAUGCCAUGGUUAUAAACUGUAAAUGGUUUAAUUGUUAGGCACCCAGCAACAGCAAAA-----------AUAUUGCCAAUAAA
...(((.(.(..((((((((((((......)))).)))))))).......((((((......)))))).......).).))).......((((..-----------...))))....... ( -26.60)
>DroYak_CAF1 77986 109 + 1
AGCGGGCGGCGGGGUAUGUCUUAAUUCUAUUUAAUGGCAUGCCAUGGUUAUAAACUGUAAAUGGUUUAAUUGUUAGGCACCCAGCAACAGCGAAA-----------AUAUUGCCAAUAAA
.(((((.(.(..((((((((((((......)))).)))))))).......((((((......)))))).......).).))).))....((((..-----------...))))....... ( -28.20)
>consensus
AUCGGGCGGCGGGGUAUGUCUUAAUUCUAUUUAAUGGCAUGCCAUGGUUAUAAACUGUAAAUGGUUUAAUUGUUAGGCACCCAGCAACAGCAAAAAA_________AUAUUGCCAAUAAA
.......(((((((((((((((((......)))).)))))))).......((((((......)))))).(((((..((.....))...)))))................)))))...... (-26.48 = -26.32 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:29 2006