Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,808,360 – 12,808,469 |
Length | 109 |
Max. P | 0.697137 |
Location | 12,808,360 – 12,808,469 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 96.32 |
Mean single sequence MFE | -21.88 |
Consensus MFE | -19.50 |
Energy contribution | -19.83 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.03 |
Structure conservation index | 0.89 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12808360 109 - 22407834 CUUUGGUCGUUGUUCGGUUGCUUACUGCCCGCAGCAAAUGCCAAAAAUUGCCGCAAACAAAAACAAUACAGCAAAACGCCAGCAAACCGGGCUAAAAAACACAAAAAAA .((((((..(((((((((((((........((.((((.(......).)))).))................((.....)).))).)))))))).))...)).)))).... ( -21.00) >DroSec_CAF1 74110 108 - 1 CUUUGGUCGUUGUUCGGUUGCUUACUACCCGCAGCAAAUGCCAAAAAUUGCCGCAAACAAAAACAAUACAGCAAAACGCCAGCAAACCGGGCAA-AAAACACAAAAAAA .((((((..(((((((((((((........((.((((.(......).)))).))................((.....)).))).))))))))))-...)).)))).... ( -24.80) >DroSim_CAF1 77355 106 - 1 CUUUGGUCGUUGUUCGGUUGCUUACUGCCCGCAGCAAAUGCCAAAAAUCGCCGCAAACAAAAACAAUACAGCAAAACGCCAGCAAACCGGGCUA-AAAACACAAAAA-- .((((((..(((((((((((((........((.((..............)).))................((.....)).))).)))))))).)-)..)).))))..-- ( -19.84) >consensus CUUUGGUCGUUGUUCGGUUGCUUACUGCCCGCAGCAAAUGCCAAAAAUUGCCGCAAACAAAAACAAUACAGCAAAACGCCAGCAAACCGGGCUA_AAAACACAAAAAAA .((((((..(.(((((((((((........((.((((.(......).)))).))................((.....)).))).))))))))...)..)).)))).... (-19.50 = -19.83 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:28 2006