Locus 4465

Sequence ID 2L_DroMel_CAF1
Location 12,808,064 – 12,808,182
Length 118
Max. P 0.599032
window7025

overview

Window 5

Location 12,808,064 – 12,808,182
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.99
Mean single sequence MFE -20.56
Consensus MFE -19.92
Energy contribution -19.88
Covariance contribution -0.04
Combinations/Pair 1.03
Mean z-score -1.16
Structure conservation index 0.97
SVM decision value 0.13
SVM RNA-class probability 0.599032
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12808064 118 - 22407834
AAAAUUGGAUUUGG--GGUCCAAGUCCGGGAGCCGAAAUAAAAAUUAAGACGUCAUCAAAAUGCAAUUAAAAAAGUAGGUAAAAAUGAAAAUAGCCGCAGAUUUAUUUAAGCCCAAACAA
.....(((((((((--...)))))))))((.((..(((((((......((.....))....(((.(((.....))).(((.............))))))..)))))))..))))...... ( -20.32)
>DroSec_CAF1 73808 120 - 1
AAAAUUGGAUUUGGGGGGUCCAAGUCCGGGAGCCGAAAUAAAAAUUAAGACGUCAUCAAAAUGCAAUUAAAAAAGUAGGUAAAAAUGAAAAUAGCCGCAGAUUUAUUUAAGCCCAAACAA
.....(((((((((.....)))))))))((.((..(((((((......((.....))....(((.(((.....))).(((.............))))))..)))))))..))))...... ( -21.62)
>DroSim_CAF1 77059 120 - 1
AAAAUUGGAUUUGGGGGGUGCAAGUCCGGGAGCCGAAAUAAAAAUUAAGACGUCAUCAAAAUGCAAUUAAAAAAGUAGGUAAAAAUGAAAAUAGCCGCAGAUUUAUUUAAGCCCAAACAA
.....((((((((.......))))))))((.((..(((((((......((.....))....(((.(((.....))).(((.............))))))..)))))))..))))...... ( -18.22)
>DroEre_CAF1 77172 119 - 1
AAAAUUGGAUUUGG-GGGUCCGAGUCCGGGAGCCGAAAUAAAAAUUAAGACGUCAUCAAAAUGCAAUUAAAAAAGUAGGUAAAAAUGAAAAUAGCCGCAGAUUUAUUUAAGCCCAAGCAA
.....(((((((((-....)))))))))((.((..(((((((......((.....))....(((.(((.....))).(((.............))))))..)))))))..))))...... ( -21.32)
>DroYak_CAF1 77374 119 - 1
AAAAUUGGAUUUGG-GGGUCCGAGUCCGGGAGCCGAAAUAAAAAUUAAGACGUCAUCAAAAUGCAAUUAAAAAAGUAGGUAAAAAUGAAAAUAGCCGCAGAUUUAUUUAAGCCCAAACAA
.....(((((((((-....)))))))))((.((..(((((((......((.....))....(((.(((.....))).(((.............))))))..)))))))..))))...... ( -21.32)
>consensus
AAAAUUGGAUUUGG_GGGUCCAAGUCCGGGAGCCGAAAUAAAAAUUAAGACGUCAUCAAAAUGCAAUUAAAAAAGUAGGUAAAAAUGAAAAUAGCCGCAGAUUUAUUUAAGCCCAAACAA
.....(((((((((.....)))))))))((.((..(((((((......((.....))....(((.(((.....))).(((.............))))))..)))))))..))))...... (-19.92 = -19.88 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:27 2006