Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,807,377 – 12,807,474 |
Length | 97 |
Max. P | 0.500000 |
Location | 12,807,377 – 12,807,474 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 93.81 |
Mean single sequence MFE | -23.50 |
Consensus MFE | -22.49 |
Energy contribution | -22.50 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.10 |
Mean z-score | -1.38 |
Structure conservation index | 0.96 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12807377 97 - 22407834 UAGUUUCCACUUGGCAAUUAGCAGUUAAUUAGCCAAUAACUAAUAGUCGUCAGUUGGAAAGUGCUUUUGUUCGGGGAAUGUCACCUGGAAUUAAUUA ((.((((((.(((((.((((..(((((.........)))))..)))).))))).)))))).))......((((((........))))))........ ( -24.00) >DroSec_CAF1 73112 96 - 1 UAGUUUUCACUUGGCAAUUAGGAGUUAAUUAGCCAAUAACUAAUAGUCGUCAGCUGGAAAGUGCUUUU-UUUGGGGAAUGUCUCCUGGAAUUAAAUA ((.((((((.(((((.((((..(((((.........)))))..)))).))))).)))))).))....(-((..(((......)))..)))....... ( -21.10) >DroSim_CAF1 76382 97 - 1 UAGUUUCCACUUGGCAAUUAGCAGUUAAUUAGCCAAUAACUAUUGGUCGUCAGCUGGAAAGUGCUUUUGUUCGGGGAAUGUCUCCUGGAAUUAAUUA ((.((((((.(((((((((((...)))))).((((((....)))))).))))).)))))).)).....((((.((((.....)))).))))...... ( -25.40) >consensus UAGUUUCCACUUGGCAAUUAGCAGUUAAUUAGCCAAUAACUAAUAGUCGUCAGCUGGAAAGUGCUUUUGUUCGGGGAAUGUCUCCUGGAAUUAAUUA ((.((((((.(((((.((((..(((((.........)))))..)))).))))).)))))).)).....((((.((((.....)))).))))...... (-22.49 = -22.50 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:23 2006