Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,803,964 – 12,804,064 |
Length | 100 |
Max. P | 0.990729 |
Location | 12,803,964 – 12,804,064 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 84.34 |
Mean single sequence MFE | -26.30 |
Consensus MFE | -26.28 |
Energy contribution | -25.83 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.55 |
Structure conservation index | 1.00 |
SVM decision value | 2.23 |
SVM RNA-class probability | 0.990729 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12803964 100 + 22407834 -----------UUUUCUCCAAUUUAUGUGUAAUACAACAUUUCUCCCACUGUAGAGCGGGCUCUGUUUGGCCUGCGGUUUGCCUAACGCGUUGUUUGCUCUGCGGUUCCUC -----------.............((((........)))).......((((((((((((((.(((((.(((.........))).)))).)..))))))))))))))..... ( -26.60) >DroSim_CAF1 71810 110 + 1 -AUUUACCUUUUUUUUUUUAAUUUAAGUAAGAUAAAACUUUUCUCUCACUGUAGAGCGGGCUCUGUUUGGCCUGCGGUUUGCCUAACGCGUUGUUUGCUCUGCGGUUCCUC -.........................(..(((.........)))..)((((((((((((((.(((((.(((.........))).)))).)..))))))))))))))..... ( -26.00) >DroYak_CAF1 72815 111 + 1 AAACGAAUUUUUUUUUUUCAAUUUAAGUUUAAGACAACUUUUCUCUCACUGUAGAGCGGGCUCUGUUUGGCCUGCGGUUCGCCUAACGCGUUGUUUGCUCUGCGGUUCCUC ........................(((((......))))).......((((((((((((((.(((((.(((.........))).)))).)..))))))))))))))..... ( -26.30) >consensus _A___A__UUUUUUUUUUCAAUUUAAGUAUAAUACAACUUUUCUCUCACUGUAGAGCGGGCUCUGUUUGGCCUGCGGUUUGCCUAACGCGUUGUUUGCUCUGCGGUUCCUC ........................((((........)))).......((((((((((((((.(((((.(((.........))).)))).)..))))))))))))))..... (-26.28 = -25.83 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:14 2006