Locus 4456

Sequence ID 2L_DroMel_CAF1
Location 12,801,004 – 12,801,124
Length 120
Max. P 0.965039
window7006

overview

Window 6

Location 12,801,004 – 12,801,124
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.66
Mean single sequence MFE -36.36
Consensus MFE -31.06
Energy contribution -31.70
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.89
Structure conservation index 0.85
SVM decision value 1.58
SVM RNA-class probability 0.965039
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12801004 120 + 22407834
UCUCAAUCGAGAGUAAAGUUAAAGCGACGCAAAUCGAAUCGUCGAGCAAGCCAACGAGUUGGUAUUAAGUGGGCUGGGUGGGGAAGAUGGAAACAUCCUUCAGCAUCGACACUUGAGGGA
((((((((((..((...((....))...))...))))...(((((((...(((.(.((((.(.......).)))).).)))(((.((((....)))).))).)).)))))..)))))).. ( -35.20)
>DroSec_CAF1 66694 120 + 1
UCUCAAUCGAGAGUAAAGUUAAAGCGACGCAAAUCGAAUCGUCGAGCAAGCCAACGAGUUGGUAUUAAGUGGGCUGGUUGGGGUAGAUGGAAACAUCCUUCAGCAUCGACACUUGAGGGA
((((((((((..((...((....))...))...))))...(((((((...(((((.((((.(.......).)))).)))))((..((((....))))..)).)).)))))..)))))).. ( -38.40)
>DroSim_CAF1 68846 120 + 1
UCUCAAUCGAGAGUAAAGUUAAAAGGACGCAAAUCGAAUCGUCGAGCAAGCCAACGAGUUGGUAUUAAGUGGGCUGGUUGGGGUAGAUGGAAACAUCCUUCAGCAUCGACACUUGAGGGA
((((((((((.......(((.....))).....))))...(((((((...(((((.((((.(.......).)))).)))))((..((((....))))..)).)).)))))..)))))).. ( -38.20)
>DroEre_CAF1 68762 119 + 1
UCUAAAUCGAGAGUAAAGUUAAAGCGACGCAAAUCGAACCGUCGAGCAAGCCAAGGAGCUGGUAUUAAGUGGGUUGGGUGG-GCAGAUGGAAACAUCCUUCAGCAUCGACACUUGAGGGA
(((...(((((.((...(((.(((....((..(((.((((..(......((((......)))).....)..)))).)))..-)).((((....))))))).)))....)).))))).))) ( -30.60)
>DroYak_CAF1 69586 119 + 1
UCUCAAUCGAGAGUAAAGUUAAAGCGACGCAAAUCGAAUCGUCGAGCAAGCCAACGAGUUGGCAUUAAGUGGGCUGGGUGG-GCAGAUGGAAACAUCCUUCAGCAUCGACACUUGAGGGA
((((((((((..((...((....))...))...))))...(((((((..(((..(.((((.((.....)).)))).)...)-)).((((....)))).....)).)))))..)))))).. ( -39.40)
>consensus
UCUCAAUCGAGAGUAAAGUUAAAGCGACGCAAAUCGAAUCGUCGAGCAAGCCAACGAGUUGGUAUUAAGUGGGCUGGGUGGGGCAGAUGGAAACAUCCUUCAGCAUCGACACUUGAGGGA
((((((((((.......(((.....))).....))))...(((((((..(((((....)))))...............(((((..((((....))))))))))).)))))..)))))).. (-31.06 = -31.70 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:09 2006