Locus 4455

Sequence ID 2L_DroMel_CAF1
Location 12,799,920 – 12,800,030
Length 110
Max. P 0.764922
window7005

overview

Window 5

Location 12,799,920 – 12,800,030
Length 110
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 87.43
Mean single sequence MFE -30.43
Consensus MFE -27.62
Energy contribution -27.75
Covariance contribution 0.12
Combinations/Pair 1.18
Mean z-score -1.54
Structure conservation index 0.91
SVM decision value 0.51
SVM RNA-class probability 0.764922
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12799920 110 - 22407834
CGCCCACAACUUGGCGCAACUAUACCGCAAAAUAUAUGUGG--AAAUAGGUAUAUAAAUACGGGCAAAAUGCUUUGUGGUUUCAUAAUGAAUGCCCGUUUGCAGAGCUGAGU
........(((..((((((((((.(((((.......)))))--..))))..........(((((((.....(.(((((....))))).)..)))))))))))...))..))) ( -29.70)
>DroSec_CAF1 65625 111 - 1
CGCCCACAACUCGGCGCAACUAUACCGCGAAAUAUAUGUGG-GCAAUAGGUAUAUAAAUACGGGCAAAAUGCUUUGUGGUUUCAUAAUUAAUGCCCGUUUGCGGAGCUGAGU
........(((((((.........(((((((((((((.((.-....)).)))))).....((((((.......(((((....)))))....))))))))))))).))))))) ( -32.80)
>DroSim_CAF1 67772 112 - 1
CGCCCACAACUCGGCGCAACUAUACCGCGAAAUAUAUGUGGGGCUAUAGGUAUAUAAAUACGGGCAAAAUGCUUUGUGGUUUCAUAAUUAAUGCCCGUUUGCGGAGCUGAGU
........(((((((.........(((((((((((((.((......)).)))))).....((((((.......(((((....)))))....))))))))))))).))))))) ( -33.00)
>DroEre_CAF1 67734 99 - 1
-----------CAGCGCAACUAUACCGCGAAAUGUAUAUGG--GAAUAGGUAUAUAAAUGCGGGCAGAAUGCUUUGUGGCUUCAUAAUUAAUGCCCGUUUGCGGAAUUGAGU
-----------.............((((((..(((((((..--......)))))))...(((((((.......(((((....)))))....)))))))))))))........ ( -26.20)
>consensus
CGCCCACAACUCGGCGCAACUAUACCGCGAAAUAUAUGUGG__CAAUAGGUAUAUAAAUACGGGCAAAAUGCUUUGUGGUUUCAUAAUUAAUGCCCGUUUGCGGAGCUGAGU
........(((((((.........((((((.((((((.((......)).))))))....(((((((.......(((((....)))))....))))))))))))).))))))) (-27.62 = -27.75 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:08 2006