| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,789,990 – 12,790,080 |
| Length | 90 |
| Max. P | 0.624117 |
| Location | 12,789,990 – 12,790,080 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 90.24 |
| Mean single sequence MFE | -14.47 |
| Consensus MFE | -13.10 |
| Energy contribution | -13.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.624117 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12789990 90 + 22407834 UGUGAUGUUUGCUCUGACAAGCCACUUUAACUAGAUGGAGCCAACAAACCUGUGCUCC-CAUCCACCUCCCCCCCCAAACCAGCUUUUCCC .(((..(((((......))))))))........((((((((((.......)).))).)-))))............................ ( -14.70) >DroSec_CAF1 59467 88 + 1 UGUGAUGUUUGCUCUGACAAGCCACUUUAACUAGAUGGAGCCAACAAACCUGUGCUCCACAUCCAACC---CCCCCUAACCAGCUUUUCCC ((.(((((..(((......)))..............(((((((.......)).))))))))))))...---.................... ( -15.20) >DroSim_CAF1 61275 91 + 1 UGUGAUGUUUGCUCUGACAAGCCACUUUAACUAGAUGGAGCCAACAAACCUGUGCUCCCCAUCCAAUCCUCCCCCCUAACCAGCUUUUCCC .(((..(((((......))))))))........((((((((((.......)).)))))..)))............................ ( -13.10) >DroEre_CAF1 61530 83 + 1 UGUGAUGUUUGCUCUGACAAGCCACUUUAACUAGAUGGAGCCAACAAACCUGUGCUCCACAUCC--------ACCCCACCCAGCUUUCCCC ((.(((((..(((......)))..............(((((((.......)).)))))))))))--------).................. ( -14.90) >consensus UGUGAUGUUUGCUCUGACAAGCCACUUUAACUAGAUGGAGCCAACAAACCUGUGCUCCACAUCCAACC___CCCCCUAACCAGCUUUUCCC .(((..(((((......))))))))........((((((((((.......)).)))))..)))............................ (-13.10 = -13.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:02 2006