Locus 4450

Sequence ID 2L_DroMel_CAF1
Location 12,779,620 – 12,779,735
Length 115
Max. P 0.654828
window6997

overview

Window 7

Location 12,779,620 – 12,779,735
Length 115
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 75.01
Mean single sequence MFE -28.58
Consensus MFE -13.84
Energy contribution -13.96
Covariance contribution 0.12
Combinations/Pair 1.33
Mean z-score -1.83
Structure conservation index 0.48
SVM decision value 0.25
SVM RNA-class probability 0.654828
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12779620 115 - 22407834
--CCGAACCCAAAGUGACUUGCUGUGAGGCGUGUUUCCCACGCUAUUUGGGUUAAUCCCCUCGCAAACCCCUCAUCCAUAAAAGUAUAUACAAUACAUAUACUCGCACAUAACUGGG
--.....((((..((....((((((((((((((.....))))).....(((.....))))))))).................(((((((.......))))))).)))....)))))) ( -29.20)
>DroSec_CAF1 56523 104 - 1
--CCGAACCCAAAGUGACUUGCUGUGAGGCGUGUUUCCCACGCUA----------UCCCCUCGCAAGCCCCUCAUCCACAAAAGUAUAUAU-GUACAUAUACUCGUACAUAACUGGG
--.....((((..((((...(((((((((((((.....)))))..----------....))))).)))...)))).............(((-((((........)))))))..)))) ( -28.10)
>DroSim_CAF1 57160 114 - 1
--CCGAACCCAAAGUGACUUGCUGUGAGGCGUGUUUCCCACGCUAUUUGGGUUAAUCCCCUCGCAAGCCCCUCAUCCACAAAAGUAUAUAU-GUACAUAUACUCGUACAUAACUGGG
--.....((((..((((...(((((((((((((.....))))).....(((.....)))))))).)))...)))).............(((-((((........)))))))..)))) ( -34.00)
>DroEre_CAF1 58473 104 - 1
--CCGAACCCACAGUGACUUGCUGUGAGGCGUGUUUCCCACGCUAUUUGGGUUAAUCCCCCCAAAUUCCCCUCAUCCACGAAGGUAUAUAC-AU----------AUACAUAACUGGG
--.......((((((.....)))))).((((((.....))))))(((((((........))))))).........(((.....(((((...-.)----------)))).....))). ( -27.70)
>DroYak_CAF1 58974 113 - 1
--CCGAACCCAAAGUGACUUGCUGUGAGGCGUGUUUCCCACGCUAUUUGGGUUAAUCCCCUCAUAUUCCCCUCAUCCAUAAAAGUAUAUAC-AUAGGUAUAA-CAUACAUAACUGGG
--.....((((..(((((((...((((((((((.....)))))(((..(((......)))..))).....)))))......)))).(((((-....))))).-....)))...)))) ( -25.20)
>DroAna_CAF1 55952 98 - 1
UUCAGGACCCAUCGUGACUUACUUUGAGGCGUGUUUCCCACGUUAUGUGGGCCUGUC-----GUCCUCCCGCUGUC---UUGAGUUUGGAA-CC----------ACAUAUAGCCGGG
..((((.((((.((((.(((.....)))(((((.....)))))))))))))))))..-----.....((((((((.---.((.((.....)-))----------)...)))).)))) ( -27.30)
>consensus
__CCGAACCCAAAGUGACUUGCUGUGAGGCGUGUUUCCCACGCUAUUUGGGUUAAUCCCCUCGCAAUCCCCUCAUCCACAAAAGUAUAUAC_AUACAUAUAC_CAUACAUAACUGGG
.......((((..(((((((..((((.((((((.....))))))....(((................)))......)))).)))).(((...)))............)))...)))) (-13.84 = -13.96 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:00 2006