Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,323,919 – 1,324,034 |
Length | 115 |
Max. P | 0.664195 |
Location | 1,323,919 – 1,324,034 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.95 |
Mean single sequence MFE | -29.14 |
Consensus MFE | -18.52 |
Energy contribution | -20.07 |
Covariance contribution | 1.55 |
Combinations/Pair | 1.16 |
Mean z-score | -1.50 |
Structure conservation index | 0.64 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664195 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1323919 115 - 22407834 CAGCAGUGGGCGAAAGAGAGGCAAGAUGCCAGAG-----AGCGCCAUUUCUGUUUUAUUGCGGUUUAUGAAUCGGUUCAUAAAUAAGCAUAUGUGUGUGUGUGUGCAAAUGCAUUUACCA .(((((..((((.......(((.....)))....-----..))))....)))))....(((((((((((((....)))))))))..(((((..(....)..)))))...))))....... ( -32.62) >DroSec_CAF1 81339 111 - 1 CAGCAGUGGGCGAAAGAGAGGCAAGAUGCCAGAG-----AGCGCCAUUUCUGUUUUAUUGCGGUUUAUGAAUCGGUUCAUAAAUAAGCAUAUGUGU----GUGUGCAAAUGCAUUUACCA .(((((..((((.......(((.....)))....-----..))))....)))))....(((((((((((((....)))))))))..((((((....----))))))...))))....... ( -31.92) >DroSim_CAF1 84827 111 - 1 CAGCAGUGGGCGAAAGAGAGGCAAGAUGCCAGAG-----AGCGCCAUUUCUGUUUUAUUGCGGUUUAUGAAUCGGUUCAUACAUAAGCAUAUGUGU----GUGUGCAAAUGCAUUUACCA .(((((..((((.......(((.....)))....-----..))))....))))).......(((..(((.....((.((((((((......)))))----))).)).....)))..))). ( -32.62) >DroEre_CAF1 94508 87 - 1 CAGCAGUGGG-----------------------------AGCGCCAUUUCUGUUUUAUUGCGGUUUAUGAAUCGGUUCAUAAAUAAGCAUAUGUGU----GUGUGCAAAUGCACUUACCA (((.(((((.-----------------------------....))))).)))......(((.(((((((((....)))))))))..)))..((.((----(.((((....)))).))))) ( -23.60) >DroYak_CAF1 84613 111 - 1 CAGCAGUGGGCGAAAGAGAGGCAAGAUGCCAGAA-----AGUUCUAUUUCUGUUUUAUUGCGGUUUAUGAAUCGGUUCAUAAAUAAGCAUAUGUGU----GUGUGCAACUGCACUUACCA ..(((((..((((.((((.(((.....)))((((-----(......))))).)))).)))).(((((((((....)))))))))..((((((....----)))))).)))))........ ( -31.90) >DroAna_CAF1 107593 108 - 1 AGACGG--AGCAUUAGAUAAGGAAAGCACUAGAGAGAAAAGCGAAAUUUCUGUUUUAUUGCGGUUUAUGAAACGGUUCAUAAAUAAGUAUAUGU----------UCGGAUGCAUUUUCGG ...(((--((((((.((........(((.((((((((((.......))))).))))).))).(((((((((....)))))))))..........----------)).)))))...)))). ( -22.20) >consensus CAGCAGUGGGCGAAAGAGAGGCAAGAUGCCAGAG_____AGCGCCAUUUCUGUUUUAUUGCGGUUUAUGAAUCGGUUCAUAAAUAAGCAUAUGUGU____GUGUGCAAAUGCAUUUACCA (((.(((((((........(((.....)))..........)).))))).)))......(((((((((((((....)))))))))..((((((........))))))...))))....... (-18.52 = -20.07 + 1.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:23 2006