Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,776,680 – 12,776,793 |
Length | 113 |
Max. P | 0.500000 |
Location | 12,776,680 – 12,776,793 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 81.92 |
Mean single sequence MFE | -28.88 |
Consensus MFE | -19.99 |
Energy contribution | -20.38 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.25 |
Mean z-score | -1.31 |
Structure conservation index | 0.69 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12776680 113 - 22407834 GCUUACUUGGUGGCAAUGUAAAGCGAUUAUUUCGCCUUAACUUCAAGUUACCCAGGAGCAUGGCACACGUUUCAGC---UUCACAUGAGGCGUUAUA-UUAGCCAAGACACAUUCGA ((((.((.((((((....(((.((((.....)))).))).......)))))).)))))).((((..((((((((..---......))))))))....-...))))............ ( -29.80) >DroSec_CAF1 53640 112 - 1 GCUUACUUGGUGGCAAUGUAAAGCGAUUAUUUCGCCUUAACUUCAAGUUACCCAGGAGCAUGGCACACGU-UCAGC---UUCACAUGAGGCGUUAUA-UUAGCCAAGACACAUUCGA ((((.((.((((((....(((.((((.....)))).))).......)))))).)))))).((((......-...((---(((....)))))......-...))))............ ( -29.87) >DroSim_CAF1 54232 113 - 1 GCUUACUUGGUGGCAAUGUAAAGCGAUUAUUUCGCCUUAACUUCAAGUUACCCAGGAGCAUGGCACACGUUUCAGC---UUCACAUGAGGCGUUAUA-UUAGCCAAGACACAUUCGA ((((.((.((((((....(((.((((.....)))).))).......)))))).)))))).((((..((((((((..---......))))))))....-...))))............ ( -29.80) >DroEre_CAF1 55777 113 - 1 GCUUACUUGGUGGCAAUGUAAAGCGAUUAUUUCGCCUUAACUUCAAGUUGCCCAGAAACAUGGCACACGUUUCAGC---UUCACAUGAGGCGUUAUA-UUAGCCAAGACACAUUCGA .....((((((((((((.(((.((((.....)))).))).......))))))..(((((.((...)).))))).((---(((....)))))......-...)))))).......... ( -30.40) >DroYak_CAF1 56054 113 - 1 GCUUAUUUGGUGACCAUGUUAAGCGAUUAUUUCGCCUUAACUUCAAGUUACCCAGGAGCAUGGCACACGUUUCAGC---UUCAUAUGAGGCGUUAUA-UUAGCCAAGACACAUUCGA ((((....((((((...(((((((((.....))).)))))).....))))))...)))).((((..((((((((..---......))))))))....-...))))............ ( -32.90) >DroAna_CAF1 53368 92 - 1 GCUUACUGGGCGGCAAUGCCGUGUGAUUAUUUCG--------------------AAAGCAUAGAACACAUUUCAAGACGCACAGAUGGGGGAUUGGAGAUAGCCAAGGA-----CGA .....((.((((((...)))((((..((((..(.--------------------...).)))).)))).((((((..(.(.(....)).)..))))))...))).))..-----... ( -20.50) >consensus GCUUACUUGGUGGCAAUGUAAAGCGAUUAUUUCGCCUUAACUUCAAGUUACCCAGGAGCAUGGCACACGUUUCAGC___UUCACAUGAGGCGUUAUA_UUAGCCAAGACACAUUCGA .....((((((.((.((((...((((.....))))..((((.....)))).......)))).))..((((((((...........))))))))........)))))).......... (-19.99 = -20.38 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:59 2006