| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,768,587 – 12,768,692 |
| Length | 105 |
| Max. P | 0.925265 |
| Location | 12,768,587 – 12,768,692 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 97.77 |
| Mean single sequence MFE | -24.17 |
| Consensus MFE | -22.95 |
| Energy contribution | -22.95 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.925265 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12768587 105 + 22407834 AUUUCCGCUGCUGUCUGUAGAAUUUCUUUGGAAUUUUUUUCGUUCCUGCAUUUUUGGGAUUCCUUGGAUUUAUUGCCUUUGUGGUAUAUAGAAAUUCUUAGGCUG ............(((((.(((((((((.((((((((.....(((((.........))))).....))))))..((((.....)))))).)))))))))))))).. ( -23.20) >DroSec_CAF1 45535 105 + 1 AUUUCCGCUGCUGUCUGUAGAAUUUCUUUGGAAUUUAUUUCGUUCCUGCUUUUUUGGGAUUCCUUGGAUUUAUUGCCUUUGUGGUAUAUAGAAAUUCUUAGGCUG ............(((((.(((((((((.(((((((((....(((((.........)))))....)))))))..((((.....)))))).)))))))))))))).. ( -24.40) >DroEre_CAF1 47570 104 + 1 AUUUCCGCUGCUGUCUGUAGAAUUUCUUUGGAAUUU-UUUCGUUCCUACUUUUUUGGGAUUCCUUGGAUUUAUUGCCUUUGUGGUAUAUAGAAAUUCUUAGGCUG ............(((((.(((((((((.((((((((-......(((((......)))))......))))))..((((.....)))))).)))))))))))))).. ( -24.20) >DroYak_CAF1 46763 104 + 1 AUUUCCGCUGCUGUCUGUAGAAUUUCUUUGGAAUUU-UUUCGUUCCUGCUUUUUAGGGAUUCCUUGGAUUUAUUGCCUUUGUGGUAUAUAGAAAUUCUUAGGCUG ............(((((.(((((((((.((((((((-....(((((((.....))))))).....))))))..((((.....)))))).)))))))))))))).. ( -24.90) >consensus AUUUCCGCUGCUGUCUGUAGAAUUUCUUUGGAAUUU_UUUCGUUCCUGCUUUUUUGGGAUUCCUUGGAUUUAUUGCCUUUGUGGUAUAUAGAAAUUCUUAGGCUG ............(((((.(((((((((.((((((((.....(((((.........))))).....))))))..((((.....)))))).)))))))))))))).. (-22.95 = -22.95 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:52 2006