Locus 4441

Sequence ID 2L_DroMel_CAF1
Location 12,765,204 – 12,765,300
Length 96
Max. P 0.817980
window6986

overview

Window 6

Location 12,765,204 – 12,765,300
Length 96
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 76.14
Mean single sequence MFE -19.43
Consensus MFE -14.40
Energy contribution -14.60
Covariance contribution 0.20
Combinations/Pair 1.06
Mean z-score -1.16
Structure conservation index 0.74
SVM decision value 0.67
SVM RNA-class probability 0.817980
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12765204 96 - 22407834
UUU--UUUCCCCUACCCACCCAUCUGCCUA------------UGCA-ACGUAAGCCAGUUAUGAUGGAAAGGACAUGUGAUCUAAUCAAUUGGCUUACAAUAAAUUUGCCG
...--...................(((...------------.)))-..((((((((((..(((((((............))).))))))))))))))............. ( -17.50)
>DroPse_CAF1 56438 103 - 1
UCGCCCUGCC--------UUUAUCACUCGUUGCAGCUCUCUUUCCACUCAUAAGCCAGUUAUGAUGAGCAGGACAUGUGAUCUAAUCAAUUGGCUAACAAUACAUUUGUCG
..(((.((..--------...(((((..(((...((((.........((((((.....)))))).))))..)))..))))).....))...)))..((((.....)))).. ( -16.60)
>DroSec_CAF1 42225 79 - 1
UU-------------------AUCUGCCCA------------UGCA-ACGUAAGCCAGUUAUGAUGGCAAGGACAUGUGAUCUAAUCAAUUGGCUUACAAUAAAUUUGUCG
..-------------------...(((...------------.)))-..(((((((((((..(((.(((......))).))).....)))))))))))............. ( -21.00)
>DroSim_CAF1 42492 79 - 1
UU-------------------AUCUGCCCA------------UGCA-ACGUAAGCCAGUUAUGAUGGCAAGGACAUGUGAUCUAAUCAAUUGGCUUACAAUAAAUUUGUCG
..-------------------...(((...------------.)))-..(((((((((((..(((.(((......))).))).....)))))))))))............. ( -21.00)
>DroEre_CAF1 42966 86 - 1
U------GCCU--U----UUUAUCUGCCUA------------UGCA-ACGUAAGCCAGUUAUGAUAGAAAGGACAUGUGAUCUAAUCAAUUGGCUUACAAUAAAUUUGUCG
.------....--.----......(((...------------.)))-..((((((((((..(((((((............))).))))))))))))))............. ( -17.80)
>DroYak_CAF1 43323 92 - 1
UUU--CUGCCUUUU----UUUAUCUGCCUA------------UGCA-GCGUAAGCCAGUUAUGAUGGAGAGGACAUGCGAUCUAAUCAAUUGGUUUACAAUAAAUUGGUCG
...--..(((....----(((((((((...------------.)))-).((((((((((..(((((((..(......)..))).)))))))))))))).)))))..))).. ( -22.70)
>consensus
UU_____GCC________UUUAUCUGCCUA____________UGCA_ACGUAAGCCAGUUAUGAUGGAAAGGACAUGUGAUCUAAUCAAUUGGCUUACAAUAAAUUUGUCG
.................................................((((((((((..((((....(((.(....).))).))))))))))))))............. (-14.40 = -14.60 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:49 2006