Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,761,908 – 12,762,000 |
Length | 92 |
Max. P | 0.688313 |
Location | 12,761,908 – 12,762,000 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 68.86 |
Mean single sequence MFE | -22.86 |
Consensus MFE | -9.38 |
Energy contribution | -9.82 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.32 |
Mean z-score | -1.78 |
Structure conservation index | 0.41 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688313 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12761908 92 - 22407834 GUCGAGAAGCCUUUUGGGAAAGGUUGGCUUAAUUGAGUUUUAAGUGAUUCUUUAAGGUUUCAAUUAAAUAACACUUUAG-GGGUUUU------------CUGCAA ((.(((((.((((..((.....((((..(((((((((..(((((......)))))..).)))))))).)))).))..))-)).))))------------).)).. ( -22.60) >DroSec_CAF1 39061 93 - 1 GUCGAGAAGCCUUUUGGGAAAGGUUGGCUUAAUUGAGUUUUAAAUGAUUCUUUGAGCUUUCAAUUAAGGAACACUUUAAGGGCCUUU------------CUGCAG ((.((((.((((((..((....(((..((((((((((.((((((......))))))..)))))))))).))).))..)))))).)))------------).)).. ( -24.80) >DroSim_CAF1 39324 93 - 1 GUCGAGAAGCCUUUUGGGAAAGGUUGGCUUAAUUGAGUUUUAAAUGAUUCUUUAAGCUUUCAAUUAAGGAACACUUUAAUAGGUUUU------------CUGCAU (.((..((((((..........(..(((((((..(((((......))))).)))))))..).(((((((....))))))))))))).------------.))).. ( -21.60) >DroEre_CAF1 39885 103 - 1 GGCGAGAAGCCUUUUGGGAGUGGUUGGCUUAAUUGAGUUUUAAAUGCUCCUUUAAGCUUUCAAUUAAGGAGAGCUUUAAGCGUUUUUAGCCCUCAA--UUUGAAU (((.(((((((((..(((((((...(((((....))))).....)))))))..((((((((.......)))))))).))).)))))).))).....--....... ( -28.40) >DroAna_CAF1 37600 83 - 1 UUCUGUCGGCCUAUUGGGAAAA-CUGUCUUAAUUGGAUUUUAAAGGUUACUUUGAAUUCUGAAAUAAAACAA---------------------GGUUAAUUCAAU ....((..((((.((((((...-...))))))(..((.(((((((....))))))).))..).........)---------------------)))..))..... ( -16.90) >consensus GUCGAGAAGCCUUUUGGGAAAGGUUGGCUUAAUUGAGUUUUAAAUGAUUCUUUAAGCUUUCAAUUAAGGAACACUUUAA_GGGUUUU____________CUGCAU .......(((((((....)))))))..(((((((((..((((((......))))))...)))))))))..................................... ( -9.38 = -9.82 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:44 2006