Locus 4436

Sequence ID 2L_DroMel_CAF1
Location 12,757,204 – 12,757,306
Length 102
Max. P 0.754259
window6978

overview

Window 8

Location 12,757,204 – 12,757,306
Length 102
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 82.92
Mean single sequence MFE -21.01
Consensus MFE -12.32
Energy contribution -12.32
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.24
Structure conservation index 0.59
SVM decision value 0.48
SVM RNA-class probability 0.754259
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12757204 102 - 22407834
ACACACGCUCUCUUUUU--UGGACCACAAAACCAAAAACCAUCGAUUUGCCCCCAUCGCCCCCA--------UCGUUUGGCCCCGCAAAUCGAUGCAAAUAAGCAAAAGGCG
.....((((....((((--(((.........))))))).(((((((((((..(((.((......--------.))..)))....))))))))))).............)))) ( -24.50)
>DroSec_CAF1 34408 101 - 1
CCACCCACUCACUUUUU--UGGACCACACAACCAAAAACCAUUGCUUU-GCCCCAACGCCCCCA--------UCGUUUGGCCCCGCAAAUCGAUGCAAAUAAGCAAAAGGCG
....((.......((((--(((.........)))))))...((((((.-(((..((((......--------.)))).)))...(((......)))....))))))..)).. ( -17.40)
>DroSim_CAF1 34632 101 - 1
CCACCCACUCACUUUUU--UGGACCACAAAACCAAAAACCAUCGCUUG-CCCCCAACGCCCCCA--------UCGUUUGCCCCCGCAAAUCGAUGCAAAUAAGCAAAAGGCG
.............((((--(((.........)))))))..........-.......((((...(--------((((((((....))))).))))((......))....)))) ( -18.50)
>DroEre_CAF1 35222 111 - 1
ACCUCCCCACCCCUUUUUGUGGACCGCAGAGCCAAAAACCAUCGCAUUG-CCCCAUCGCCCCCAUCACCCCCUCGUUUGCCCCCGCAAAUCGAUGCAAAUAAGCAAAAGGCG
......((((........))))...((((.((...........)).)))-).....((((............((((((((....))))).)))(((......)))...)))) ( -21.80)
>DroYak_CAF1 35297 108 - 1
AACUCCCCACACUCUUU--UGGACCACAGAACCAA-AACCAUCGCUGUGUCCCCAUCGCCCCCAUUGCCCCAUCGUUUGCC-CCGCAAAUCGAUGCAAAUAAGCAAAAGGCG
.................--.((((.((((......-........))))))))....((((....((((..((((((((((.-..))))).))))).......))))..)))) ( -22.84)
>consensus
ACACCCACUCACUUUUU__UGGACCACAAAACCAAAAACCAUCGCUUUGCCCCCAUCGCCCCCA________UCGUUUGCCCCCGCAAAUCGAUGCAAAUAAGCAAAAGGCG
...................(((.........)))......................((((............(((((((......)))).)))(((......)))...)))) (-12.32 = -12.32 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:42 2006