Locus 4429

Sequence ID 2L_DroMel_CAF1
Location 12,746,538 – 12,746,648
Length 110
Max. P 0.596766
window6967

overview

Window 7

Location 12,746,538 – 12,746,648
Length 110
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 67.96
Mean single sequence MFE -16.17
Consensus MFE -5.35
Energy contribution -3.59
Covariance contribution -1.76
Combinations/Pair 1.41
Mean z-score -1.83
Structure conservation index 0.33
SVM decision value 0.13
SVM RNA-class probability 0.596766
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12746538 110 - 22407834
UU------UGACAAAAAAUAGCUUAAACUUUAAAGUAAAAUGAUUUUACAAUUUUAAAACAUUUCAAUACAAUU--UAAAGUAGCUUCCUUUUAUAAAGGACACGCACUUUCACUCCC
..------(((........((((...((((((((((((((((.(((((......))))))))))...)))..))--))))))))))(((((.....))))).........)))..... ( -14.50)
>DroPse_CAF1 25691 99 - 1
UUCCCAUUUGAAUUAAA----UUUCAACUUUUG-UUCAAAUGAA---AAAAGUUG-----------AGAAAAUUCCCCAACUAGCUUUCAACCUUGUCGAGCACGCACUUUCACUCGC
.........(((((...----(((((((((((.-(((....)))---))))))))-----------))).)))))........((((.((....))..))))................ ( -15.90)
>DroSec_CAF1 23412 109 - 1
UG------UGACAAAAAACAGCUUUAACUUUAAAGUAAAAUGAUUUAAC-AUUUUAAAACUUUUCAAUACAAUU--UAAAGUAGCUUCCUUUCAUGAAGGACACGCACUUUCACUCCC
.(------(((........((((...((((((((.(((((((......)-))))))................))--))))))))))((((((...)))))).........)))).... ( -17.63)
>DroSim_CAF1 23829 109 - 1
UG------UGACAAAAAACAGUUUAAGCUUUGAAGUAAAAUGAUUUAAC-AUUUUAAAACUUUUCAAUACAAUU--UAAAGUAGCUUCCUUUCAUGAAGGACACGCACUUUCACUCCC
.(------(((...............((((((((.(((((((......)-))))))................))--)))))).((.((((((...))))))...))....)))).... ( -16.93)
>DroPer_CAF1 25675 99 - 1
UUCCCAUUUGAAUUAAA----UUUCAACUUUUG-UUCAAAUGAA---AAAAGUUG-----------AGAAAAUUCCCCAACUAGCUUUCAACCUUGUCGAGCACGCACUUUCACUCGC
.........(((((...----(((((((((((.-(((....)))---))))))))-----------))).)))))........((((.((....))..))))................ ( -15.90)
>consensus
UU______UGACAAAAAA_AGUUUAAACUUUAAAGUAAAAUGAUUU_ACAAUUUUAAAAC_UUUCAAUACAAUU__UAAAGUAGCUUCCUUUCAUGAAGGACACGCACUUUCACUCCC
........................................(((.......((((((....................)))))).((.((((((...))))))...))....)))..... ( -5.35 =  -3.59 +  -1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:31 2006