Locus 4428

Sequence ID 2L_DroMel_CAF1
Location 12,744,882 – 12,744,979
Length 97
Max. P 0.978184
window6966

overview

Window 6

Location 12,744,882 – 12,744,979
Length 97
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 79.12
Mean single sequence MFE -23.16
Consensus MFE -13.48
Energy contribution -13.87
Covariance contribution 0.39
Combinations/Pair 1.06
Mean z-score -3.02
Structure conservation index 0.58
SVM decision value 1.81
SVM RNA-class probability 0.978184
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12744882 97 - 22407834
AUAUUAGUCAGGCAAAAUG-UGAGGCUACCAGCUUUAAGUUGUCAAAAAAGAAA----AGA-AAUUCGAAGGAUUUCGAAGAUGACAAUACAUUUAAAGCUAA-
....(((((..((.....)-)..)))))..(((((((((((((((.........----.((-((((.....)))))).....)))))))....))))))))..- ( -21.16)
>DroSec_CAF1 21827 102 - 1
AUAUUAGUCAGGCAAAAUG-UGAGGCUACUAGCUUUAAGUUGUCAAAAAAGAAAGUAAAGAAAGUUCGAAGGAUUUCAAAGAUGACAACACAUUUAAAGCUAA-
....(((((..((.....)-)..))))).((((((((((((((((.....((((.....((....))......)))).....)))))))....))))))))).- ( -22.50)
>DroSim_CAF1 22187 102 - 1
AUAUUAGUCAGGCAAAAUG-UGAGGCUACGAGCUUUAAGUUGUCAAAAAAGAAAGUAAAGAAAGUUCGAAGGAUUUCGAAGAUGACAACACAUUUAAAGCUAA-
....(((((..((.....)-)..)))))..(((((((((((((((.....((((.....((....))......)))).....)))))))....))))))))..- ( -22.50)
>DroEre_CAF1 23557 100 - 1
AUAUUAGUCAGGCAAAAUG-UGAGGCUAA-GGCUUUAAGUUGUCAAAAG--CCAAGCAAAAAGGUUCGAAGGAUUUCCAAGAUGACAACACAUUUAAAGCUAAA
...((((((..((.....)-)..))))))-(((((((((((((((...(--(...)).....((.((....))...))....)))))))....))))))))... ( -25.80)
>DroYak_CAF1 22399 100 - 1
AUUUUAGUCAGGCAAAAUG-UGAGGCUAA-AGCUUUAAGUUGUCAAAAG--CCACGCAAGAAGGUUCGAAGGAUUUCUAAGAUGACAACACAUUUAAAGCUAAA
...((((((..((.....)-)..))))))-(((((((((((((((...(--((.(....)..)))((....)).........)))))))....))))))))... ( -26.20)
>DroAna_CAF1 21509 88 - 1
A---CAGUCAGCCAGAGUUUUGAGAAUU-AAGCUUAAAGCUGUCAAAUG--CAAGCAUCUGAAGUUCGAAGGAUUUCUGAGAUGACAACACU---------AU-
.---..((((.((((((((((..(((((-.(((.....))).(((.(((--....))).))))))))..)))).))))).).))))......---------..- ( -20.80)
>consensus
AUAUUAGUCAGGCAAAAUG_UGAGGCUAC_AGCUUUAAGUUGUCAAAAA__AAAGGAAAGAAAGUUCGAAGGAUUUCGAAGAUGACAACACAUUUAAAGCUAA_
......(((((((((.....((((((.....))))))..))))).....................((....)).........)))).................. (-13.48 = -13.87 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:30 2006