Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,719,124 – 12,719,229 |
Length | 105 |
Max. P | 0.539541 |
Location | 12,719,124 – 12,719,229 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 83.15 |
Mean single sequence MFE | -29.96 |
Consensus MFE | -15.94 |
Energy contribution | -16.10 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -2.17 |
Structure conservation index | 0.53 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539541 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12719124 105 - 22407834 AAAAAACUCGCUGCGAUUCAAACGAAUCGGUUGUGGGGGAUCGGAGUGAAUAGAAUCGAAUCGAAACAAAACGAGCCGUAGCGGUUGAGGUCGGAUCGCUAUUUG ....(((.(((((((((((....)))))((((((...(..((((..(((......)))..))))..)...)).)))))))))))))................... ( -28.40) >DroSec_CAF1 5710 102 - 1 GAAAAACUCGCUGCGAUUCAAAGGAAUCG--UAUGGGGUUUCGAAGUGAAUAGAAUCGAAUCGAAACAAAACGAGAAGUAGCGGUUGAGGUCGGAUCGCUGUUU- ......((((.((((((((....))))))--))....(((((((..(((......)))..)))))))....))))...((((((((.......))))))))...- ( -31.40) >DroSim_CAF1 5861 102 - 1 GAAAAACUCGCUGCGAUUCAAACGAAUCG--UAUGGGGUUUCGAAGUGAAUAGAAUCGAAUCGAAACAAAACGAGCCGUAGCGGUUGAGGUCGGAUCGCUGUUU- ......((((.((((((((....))))))--))))))(((((((..(((......)))..)))))))...........((((((((.......))))))))...- ( -30.90) >DroEre_CAF1 5995 90 - 1 GAAAAACUCGCUGCGAUUCAAACGAUUCG--GCUCUG--AUCGGAGUGAAUAGAAUCGA----------AACGAGCCGUAGCGGUUGGGAUCGGAUCGGUUUUU- .((((((.((.(.((((((...((((((.--(((((.--...))))).....)))))).----------....(((((...))))).)))))).).))))))))- ( -28.90) >DroYak_CAF1 6014 91 - 1 GAAAAACUCGCUGCGAUUCAAACGCAUCG--GCUCUG--AUCGGAGUGAAUAGAAUCGA---------AAACGAGCCGUAGCGGUUGGGAUCGGAUCGGUUUUU- .((((((.((.(.((((((...(((..((--(((((.--.((((..(.....)..))))---------..).))))))..)))....)))))).).))))))))- ( -30.20) >consensus GAAAAACUCGCUGCGAUUCAAACGAAUCG__UAUGGGG_AUCGGAGUGAAUAGAAUCGAAUCGAAACAAAACGAGCCGUAGCGGUUGAGGUCGGAUCGCUGUUU_ ....(((.(((((((((((....)))))............((((..(.....)..))))..................)))))))))................... (-15.94 = -16.10 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:27 2006