Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,717,781 – 12,717,873 |
Length | 92 |
Max. P | 0.527205 |
Location | 12,717,781 – 12,717,873 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 80.71 |
Mean single sequence MFE | -38.38 |
Consensus MFE | -23.77 |
Energy contribution | -25.83 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.25 |
Mean z-score | -1.54 |
Structure conservation index | 0.62 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12717781 92 + 22407834 CCAAUCAAUGUUCCGCGGCGGCGACGGAGUGCGUGG----CCGCGACUCGACGUCGUCGUGGCUAGCCACCGCUUCCUCGAUGGCUUGGAGCACCU ........((((((((.((((((((((((((((...----.))).))))..))))))))).)).(((((.((......)).))))).))))))... ( -43.00) >DroSec_CAF1 4370 92 + 1 CCAAUCAAUGUUCCGCGGCGGCGACGGAGUGCGUGG----ACGCGACCCGACGUCGUCGUAGCUAUCCACCGCUUCCUGGAUGGCCCGGAGCACCU ........(((((((((((((((.(((..((((...----.))))..))).))))))))).((((((((........))))))))..))))))... ( -45.60) >DroSim_CAF1 4515 92 + 1 CCAAUCAAUGUUCCGCGGCGGCGACGGAGUGCGUGG----ACGCGACCCGACGUCGUCGUAGCUAUCCACCGCUUCCUCGAUGGCCCGGAGCACCU ........(((((((.(((.((((.((((((.((((----(.((....((((...))))..))..))))))))))).))).).))))))))))... ( -41.00) >DroEre_CAF1 4643 92 + 1 CCAAUCAAUGUUCCGCGGGGGCGAUGGAGUGCGUGG----ACGCGACUCGACUUCGUCGUGGCCAUCCACCGCAUCCUCGAUGGCACGAAGCACCU ........(((.(((((((((((.((((.....(((----.((((((........)))))).))))))).)))..))))).))).)))........ ( -32.20) >DroYak_CAF1 4637 92 + 1 CCAAUCAAUGUUUCGCGGCGGCGAUGGAGUGCGCGG----ACGCGACUCCACAUCGUCGUGCCCCUCCACCGCAUCCUCUAUGGCCCGAAGCACCU ........(((((((.((((((((((((((.(((..----..)))))))))..)))))((((.........))))........))))))))))... ( -35.70) >DroAna_CAF1 4201 92 + 1 CCAAUCUAUGUUCCUCGGCGGCGGAGGAGUGCGUGGUCUGACGAGAUCCUG----CUCAUAGUCCUGCACGUAGUCGCCAAUGGAGCGCAGCACUU .....((.((((((..((((((......(((((.((.(((..(((......----))).))).)))))))...))))))...)))))).))..... ( -32.80) >consensus CCAAUCAAUGUUCCGCGGCGGCGACGGAGUGCGUGG____ACGCGACCCGACGUCGUCGUAGCCAUCCACCGCUUCCUCGAUGGCCCGGAGCACCU ........(((((((..(((((((((..(.(((((......)))).).)..))))))))).((((((............)))))).)))))))... (-23.77 = -25.83 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:26 2006