Locus 4422

Sequence ID 2L_DroMel_CAF1
Location 12,712,441 – 12,712,547
Length 106
Max. P 0.536445
window6960

overview

Window 0

Location 12,712,441 – 12,712,547
Length 106
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 87.63
Mean single sequence MFE -25.80
Consensus MFE -20.42
Energy contribution -19.86
Covariance contribution -0.56
Combinations/Pair 1.19
Mean z-score -1.45
Structure conservation index 0.79
SVM decision value 0.01
SVM RNA-class probability 0.536445
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12712441 106 + 22407834
UGUCUGGU-GCCAGGGUUGCAAAGCAAUGAAAGCCGGCUGCUCAAAAUGGUAAUAAGUCCGAUUCGAAGUUGGUAUUUUUAUUGAAAAAUACUGAGCGUGAUAGAAA
..((((.(-(((((..((......(((((((((((((((..((.((.(((........))).)).)))))))))..))))))))...))..))).)))...)))).. ( -24.50)
>DroSec_CAF1 7653 106 + 1
UGUCUGGU-GCCAGGGUUGCAAAGCAAUGAAAGCCGGCUGCUCAAAAUGGUAAUAAGUCCGAUUCGAAGUUGGUAUUUUUAUUGAAAAAUACUGACAGUAAAAGAAA
..(((..(-((..((((.((...((.......))..)).))))....(((........))).......((..((((((((....))))))))..)).)))..))).. ( -24.10)
>DroSim_CAF1 6428 106 + 1
UGUCUGGU-GCCAGGGUUGCAAAGCAAUGAAAGCCGGCUGCUCAAAAUGGUAAUAAGUCCGAUUCGAAGUUGGUAUUUUUAUUGAAAAAUACUAACAGUAAAAGAAA
..(((..(-((..((((.((...((.......))..)).))))....(((........))).......((((((((((((....)))))))))))).)))..))).. ( -24.60)
>DroEre_CAF1 7808 107 + 1
UGUCUGACAGCCAGGGUUGCAAAGCAAUGAAAGCCGGCUGCACAAAAUGGUAAUAAGUCCGAUUUGACGUUGGUAUUUUUCGGUGAAAAUACCAACUUUAAAUGAAA
....((.(((((.((.((.((......)).)).)))))))))((((.(((........))).))))..((((((((((((....))))))))))))........... ( -29.80)
>DroYak_CAF1 7988 104 + 1
UGUCUGACAGCCAGGGUUGCAACGCAAUGAAAGCCGGCUACACAAAAUGGUAAUAAGUCCGAUUUGACGUUGGUAUUUUUUGCGAGAUAUACCAACCUUAA---AAA
((((((.((((....)))))..(((((.(((.((((((....((((.(((........))).))))..)))))).))).))))))))))............---... ( -26.00)
>consensus
UGUCUGGU_GCCAGGGUUGCAAAGCAAUGAAAGCCGGCUGCUCAAAAUGGUAAUAAGUCCGAUUCGAAGUUGGUAUUUUUAUUGAAAAAUACUAACAGUAAAAGAAA
.(.((....((((.(((.((...((.......))..)).)).)....))))....)).).........((((((((((((....))))))))))))........... (-20.42 = -19.86 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:24 2006