Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,706,976 – 12,707,096 |
Length | 120 |
Max. P | 0.561047 |
Location | 12,706,976 – 12,707,096 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.39 |
Mean single sequence MFE | -32.02 |
Consensus MFE | -22.64 |
Energy contribution | -25.58 |
Covariance contribution | 2.94 |
Combinations/Pair | 1.06 |
Mean z-score | -1.50 |
Structure conservation index | 0.71 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.561047 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12706976 120 - 22407834 UCACAGAUCGCGACUUCUUCACGCCACGAAAGAUUCGUAGACCAAAGGAUCUUCCGCCAGUGGAGAACAGUCCGGAUAACUCAGCCGAUGACUCAUUUCACACCGCUAAAAGUCUGAGCA ...(((((((.(((((((((((....((.(((((((..........))))))).))...)))))))..))))))........(((.(.(((......)))..).)))....))))).... ( -29.40) >DroSec_CAF1 2322 118 - 1 UAACAGAUC-CGAGUUCUUCACGACACGGAAGAUUCGUAGACCAAAGGAUCUUCCGCCAGCGGAGAACAGUCCGGAUAACUCAGCCGAUGACUCAUUUCACAC-GCUGAAAGUCUGAGCA ...((((((-((.(((((((.(....((((((((((..........))))))))))...).)))))))....))))....(((((...(((......)))...-)))))...)))).... ( -38.40) >DroEre_CAF1 2386 120 - 1 UCACAGAUCGCAAAUUCUUCGCGCCACGGAAGAUUCGCAGACCAAAGGAGCUUCCGCCAGCGGAGUACAUUCCUAAUAACUCAACAGAAGACUCAUUCCACACCGCUGAAAGUCUGAGCA ...((((((((.........)))...((((((.(((..........))).)))))).(((((((((............))))....(((......))).....)))))...))))).... ( -25.90) >DroYak_CAF1 2541 120 - 1 UCACAGAUCGCGAGUUCUUCAAACCACGGAAGAUUUGCAGAUUAAAGGAUCUUCCGCUAGCGGAAUACAGUCCUAACAACUCAGCAGAUGACUCGUUCCACAUCGCUGAAAGUCUGAGCA ...(((((.((((((.((((........)))))))))).......(((((.(((((....)))))....)))))......(((((.((((..........)))))))))..))))).... ( -34.40) >consensus UCACAGAUCGCGAGUUCUUCACGCCACGGAAGAUUCGCAGACCAAAGGAUCUUCCGCCAGCGGAGAACAGUCCGAAUAACUCAGCAGAUGACUCAUUCCACACCGCUGAAAGUCUGAGCA ...(((((.....(((((((((....((((((((((..........))))))))))...)))))))))............(((((...((........))....)))))..))))).... (-22.64 = -25.58 + 2.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:23 2006