Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,705,570 – 12,705,684 |
Length | 114 |
Max. P | 0.500000 |
Location | 12,705,570 – 12,705,684 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.47 |
Mean single sequence MFE | -43.45 |
Consensus MFE | -22.20 |
Energy contribution | -22.65 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.28 |
Mean z-score | -1.60 |
Structure conservation index | 0.51 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12705570 114 + 22407834 GCUCU-----GUUUAUUUC-UUACAGUGGGUGUGGGAGAAGCGGCCAACUUUGCGGCCUACGCCUUUGCCCCCGCUUCAUUGGUCACUCCGUUGGGCGCGCUGAGUGUUAUCAUCUCAGC .....-----.....((((-(((((.....))))))))).(((.(((((...((((.....((....))..))))......((.....))))))).)))((((((((....)).)))))) ( -37.50) >DroVir_CAF1 1208 119 + 1 GUUAUCGUUUGUGUGUGCC-UUGCAGUGGGCUUGGGCGAAGCAGCCAAUUUUGCCGCGUAUGCAUUCGCACCCGCCUCCCUGGUGACGCCGCUGGGCGCGCUGAGCGUCAUCAUCUCGGC (....((((((.(((((((-...((((((((...(((......)))......)))((((.(((....)))..((((.....))))))))))))))))))))))))))....)........ ( -43.60) >DroPse_CAF1 338 113 + 1 GUCAU-----CAUU-GUCU-UUGCAGUGGGCCUGGGUGAGGCGGCUAACUUUGCCGCCUACGCCUUUGCGCCCGCUUCCCUGGUGACCCCCCUGGGGGCACUGAGUGUGAUUAUUUCGUC ((((.-----((((-....-....((((((((.((((((((((((.......))))))).)))))..).))))))).....((((.((((....)))))))).))))))))......... ( -52.90) >DroGri_CAF1 430 112 + 1 GAUAUC-------UGUUUU-UUGCAGUGGGUCUUGGCGAGGCAGCCAAUUUUACGGCGUAUGCGUUUGCUCCCGCCUCGCUGGUGACGCCCCUGGGCGCACUGAGUGUCAUCAUUUCGGC (((((.-------......-...(((((.((((..(((((((.(((........)))(((......)))....)))))))..).)))(((....))).))))).)))))........... ( -41.80) >DroWil_CAF1 745 115 + 1 AAUCA-----AUUUCUUUCUUUACAGUGGGACUGGGUGAGGCGGCCAACUUCGCUGCCUAUGCCUUUGCUCCGGCGUCUCUCGUCACACCUCUGGGUGCUCUCAGUGUUAUCAUAUCAGC .....-----............(((.(((((..((((((((((((.......))))))).))))).......((((.....)))).((((....)))).))))).)))............ ( -32.30) >DroPer_CAF1 338 113 + 1 AUCAU-----CAUU-GUCU-UUGCAGUGGGCCUGGGUGAGGCGGCUAACUUUGCCGCCUACGCCUUUGCGCCCGCUUCCCUGGUGACCCCCCUGGGGGCACUGAGUGUGAUUAUUUCGUC ...((-----(((.-.((.-....((((((((.((((((((((((.......))))))).)))))..).))))))).....((((.((((....))))))))))..)))))......... ( -52.60) >consensus GUUAU_____CUUU_UUCC_UUGCAGUGGGCCUGGGUGAGGCGGCCAACUUUGCCGCCUACGCCUUUGCGCCCGCUUCCCUGGUGACCCCCCUGGGCGCACUGAGUGUCAUCAUUUCGGC .....................(((.(((((...(((((..((.((.......)).))...))))).....)))))......((((.((((....))))))))..)))............. (-22.20 = -22.65 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:22 2006