Locus 442

Sequence ID 2L_DroMel_CAF1
Location 1,316,464 – 1,316,558
Length 94
Max. P 0.707490
window717

overview

Window 7

Location 1,316,464 – 1,316,558
Length 94
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 82.48
Mean single sequence MFE -28.43
Consensus MFE -21.44
Energy contribution -21.83
Covariance contribution 0.39
Combinations/Pair 1.25
Mean z-score -1.75
Structure conservation index 0.75
SVM decision value 0.37
SVM RNA-class probability 0.707490
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1316464 94 + 22407834
CCGAAAUCCGAGGCAAUUUGCCUUCUUGGUGUAACCACUGAGAAAAUAUUGUGUGUCAUUAUCGACACGGCACAGUGGGGCAAAUAAGCG------AUA-G
............((.(((((((((((..(((....)))..)))...(((((((((((......)))...))))))))))))))))..)).------...-. ( -28.80)
>DroSec_CAF1 73990 85 + 1
CCGAACUCCGAGGCAAUUUGCCUUCUUGGUGUAACCACUGUGAAAAUAUUGUGUGGCAUUAUCGACACGGCACAGUGGGGCAA---------------A-G
((..((.(((((((.....)))))...)).))..((((((((......((((((.(......).))))))))))))))))...---------------.-. ( -27.20)
>DroSim_CAF1 75270 85 + 1
CCGAACUCCGAGGCAAUUUGCCUUCUUGGUGUAACCACUGUGAAAAUAUUGUGUGGCAUUAUCGACACGGCACAGUGGGGCAA---------------A-G
((..((.(((((((.....)))))...)).))..((((((((......((((((.(......).))))))))))))))))...---------------.-. ( -27.20)
>DroEre_CAF1 87470 101 + 1
CCGGACUCCGUGGCAAUUUGCCUUCUUGGUGUAACCACUGUGAAAAUAUUGUGUGGCAUUAUCGGCACGGCACAGUGGGUCAAAUUGGGAAACUAAAUUUC
...(((.(((.(((.....)))....))).....((((((((......((((((.(......).)))))))))))))))))...((((....))))..... ( -30.80)
>DroYak_CAF1 77137 100 + 1
CCGGACUCCGGGGCAAUUUGCCUUCUUGGUGUAACCACUGUGAAAAUAUUGUGUGGCAUUAUCGACACGGCACAGUGGGGCAAGUGGGCAAACUGAAUA-G
((((...))))..((.(((((((.((((.(....((((((((......((((((.(......).))))))))))))))).)))).))))))).))....-. ( -35.60)
>DroAna_CAF1 99933 85 + 1
CAGGACUCUAUGGCAAUUUGCCUUCUUGGUGUAACCGCUGUGAAAAUAUUGUGUGGCAUUAUCGACAUUGCACAGUGACACAAA----------------A
(((((......(((.....))).)))))((((...(((((((........((((.(......).))))..)))))))))))...----------------. ( -21.00)
>consensus
CCGAACUCCGAGGCAAUUUGCCUUCUUGGUGUAACCACUGUGAAAAUAUUGUGUGGCAUUAUCGACACGGCACAGUGGGGCAAA______________A_G
....((.(((((((.....))))...))).))..((((((((......((((((.(......).))))))))))))))....................... (-21.44 = -21.83 +   0.39) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:19 2006