Locus 4419

Sequence ID 2L_DroMel_CAF1
Location 12,705,236 – 12,705,328
Length 92
Max. P 0.737041
window6957

overview

Window 7

Location 12,705,236 – 12,705,328
Length 92
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 64.40
Mean single sequence MFE -19.26
Consensus MFE -8.40
Energy contribution -7.60
Covariance contribution -0.80
Combinations/Pair 1.43
Mean z-score -1.79
Structure conservation index 0.44
SVM decision value 0.44
SVM RNA-class probability 0.737041
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12705236 92 - 22407834
UUAAAUUAAAAAUAUCAGCAACGGAAGUUUGUGAUAGCAGGUACAUAUGU---------------GUUAUUUUAUUACCUUUUUGGAUAUGAAACA--UAUGGAAAA---GU--------
............(((((..(((....)))..))))).......(((((((---------------.....(((((..((.....))..))))))))--)))).....---..-------- ( -15.90)
>DroSec_CAF1 464 88 - 1
UUAUAUUACACAAAUCAGCAACGGAAGUUUGUGAUAGCAGGAA----GGU---------------GUUAUUUUGUAACCUUUUUGGAUAUGAAACA--UAUGGAAAA---GU--------
(((((((......((((..(((....)))..))))..((((((----(((---------------...........))))))))))))))))....--.........---..-------- ( -18.80)
>DroSim_CAF1 438 88 - 1
UUAAAUUACACAAAUCAGCAACGGAAGUUUGUGAUAACAGGAG----GUC---------------GUUAUUUUGUAAGCUUUUUGGAUAUGAAACA--UAUGGAAAA---GU--------
.....(((((.((((....(((((...(((((....)))))..----.))---------------))))))))))))(((((((.(.((((...))--))).)))))---))-------- ( -14.70)
>DroEre_CAF1 456 105 - 1
UUAAAUGACGCACAUCAGGAACGGAAGUUUGUGAUAGCACGAC----AUUUUUCUAUGGAAAAUAUAUGAAAAAUAAUGAUUUACUAAUCACAUUAGAAAUGGAAAAUA-----------
...((((..((..((((.((((....)))).)))).)).....----(((((((((((.....)))).)))))))..(((((....)))))))))..............----------- ( -20.20)
>DroYak_CAF1 480 99 - 1
UUAAAUGACACAUGCCGGGAACGGAAGUUUGCGGUAGCAUGAA----GGU---------------CAUAAUUAAUAACAUUUUUCUAUGUAAAGUA--UAUGGAAAAUAAAUAUUUACUA
....(((((.(((((((.((((....)))).))...)))))..----.))---------------)))............(((((((((((...))--)))))))))............. ( -26.70)
>consensus
UUAAAUUACACAAAUCAGCAACGGAAGUUUGUGAUAGCAGGAA____GGU_______________GUUAUUUUAUAACCUUUUUGGAUAUGAAACA__UAUGGAAAA___GU________
.............((((..(((....)))..))))..................................................................................... ( -8.40 =  -7.60 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:21 2006