Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,704,833 – 12,704,928 |
Length | 95 |
Max. P | 0.726700 |
Location | 12,704,833 – 12,704,928 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 79.65 |
Mean single sequence MFE | -38.92 |
Consensus MFE | -24.04 |
Energy contribution | -26.60 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.16 |
Mean z-score | -1.75 |
Structure conservation index | 0.62 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.726700 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12704833 95 + 22407834 GUGACGGUGGGUGGCAUGCUGCCGGUAGAAGCCAACCAAUCGCCUGAAACCGCUCCGCUUUCGAUGGCGGAGACGGUGUCCAACACGGACUUCUA ((((...(((.((((...(((....)))..)))).))).))))..((((((((((((((......))))))).))))((((.....))))))).. ( -39.40) >DroSec_CAF1 45 95 + 1 AUGACGGUGGGGGGCAUGCUCCCGGGCGAAGCCAACCAAUCGCCUGACACCGCUCCGCUUUCGAUGGCGGAGGCGGUGUCCAACACGGACUUCUA ....(.((((((((....)))))((((((..........))))))((((((((((((((......)))))).))))))))...))).)....... ( -46.80) >DroSim_CAF1 49 95 + 1 AUGACGGUGGGGGGCAUGCUCCCGGGCGAAGCCAACCAAUCGCCUGACACCGCUCCGCUUUCGAUGGCGGCGGCAGUGUCCAACACGGACUUCUA .....(((((((((....)))))((((((..........))))))..))))((((((((......))))).)))((.((((.....))))..)). ( -40.40) >DroEre_CAF1 43 95 + 1 AUGACUGUGGGGGUCAUGCUCCCGGGAGAAGCCAACCAAUCGCCUGACACCGCUCCGCUUUCGGUGGCGGAGGCGGUGUCCAACAAGGACUUCUA .....(.((((((.....)))))).)(((((((...(....)...((((((((((((((......)))))).))))))))......)).))))). ( -40.00) >DroYak_CAF1 45 95 + 1 AUGACGGUGGGGGGCAUGCUCCCGGGUGAAGCCAACCAAUCGCCUGACACCGCUCCCCUUUCGGUGGCGCAGGCGGUAUCCAACACGGAUUUCUA .....(((.(((((....))))).((.....)).))).((((((((.(.(((((........))))).)))))))))((((.....))))..... ( -36.70) >DroPer_CAF1 39 86 + 1 ACGCAGGCAGCCAGCAUGCCAGUAGCUGGACCCA-------GCCUGGCCCCGCCC--GUCACACUGGCGGCGCCCUUGACGAAUACAGACUUCUA .(((((((.(((.....(((((..((((....))-------)))))))...(((.--(.....).)))))))))..)).)).............. ( -30.20) >consensus AUGACGGUGGGGGGCAUGCUCCCGGGAGAAGCCAACCAAUCGCCUGACACCGCUCCGCUUUCGAUGGCGGAGGCGGUGUCCAACACGGACUUCUA .....(((((((((....)))))((......)).......)))).((((((((((((((......))))))).)))))))............... (-24.04 = -26.60 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:20 2006