Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,704,636 – 12,704,742 |
Length | 106 |
Max. P | 0.650048 |
Location | 12,704,636 – 12,704,742 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 87.22 |
Mean single sequence MFE | -34.37 |
Consensus MFE | -26.22 |
Energy contribution | -28.06 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.10 |
Mean z-score | -1.65 |
Structure conservation index | 0.76 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650048 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12704636 106 - 22407834 AGUCACAAGCCAACAAUGAAUCUUUGGAGUGGCUGCAUGCGGACAGCGGGUAAAUACCGACCCUACCAACACUGUCAGUGAUGUCAGCUAGGCUGACUGCAUUUGC-- ((((((...((((..........)))).))))))((((((((.((((((((........))))........(((.((....)).)))....)))).)))))..)))-- ( -33.80) >DroSec_CAF1 5426 108 - 1 AGUCACAAGCCAACAAUGAAUCUUUGGAGUGGCUGCAUGCGGACAGCGGGUAAAUACCGACCCUACCAACACUGCCAGUGAUGGCAGCUCGGCUGACUGCAUUUGCUA ((((((...((((..........)))).))))))((((((((.((((((((........))))........((((((....))))))....)))).)))))..))).. ( -41.00) >DroSim_CAF1 5458 108 - 1 AGUCACAAGCCAACAAUGAAUCUUUGGAGUGGCUGCAUGCGGACAGCGGGUAAAUACCGACCCUACCAACACUGCCAGUGAUGGCAGCUCGGCUGACUGCAUUUGCUA ((((((...((((..........)))).))))))((((((((.((((((((........))))........((((((....))))))....)))).)))))..))).. ( -41.00) >DroEre_CAF1 6329 108 - 1 AGUCACAAACCAACAAUGAAUCUCAGGAGUGGCUGCAUGCGGACAGCCGGAAAAUACCGCCCUUACCAACACUGUCAGUGAUGGCAGCUCGGCUGACUGCGUUUGCGG ((((((...((..............)).))))))((((((((.(((((((......)).............((((((....))))))...))))).)))))..))).. ( -34.24) >DroYak_CAF1 5657 95 - 1 AGUCACAAGCCAACAACGAAUCUCAG-AGUGGCUGCAUGCGGACAGCGGGAAAAUACCGGCCU------------CAGUGAUGCCAGCUAGACUGACUGCAUUUACUA .......(((((....(........)-..)))))..((((((.((((((.......))(((.(------------(...)).))).....).))).))))))...... ( -21.80) >consensus AGUCACAAGCCAACAAUGAAUCUUUGGAGUGGCUGCAUGCGGACAGCGGGUAAAUACCGACCCUACCAACACUGCCAGUGAUGGCAGCUCGGCUGACUGCAUUUGCUA ((((((...((..............)).))))))((((((((.((((((((........))))........((((((....))))))....)))).)))))..))).. (-26.22 = -28.06 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:19 2006