Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,698,483 – 12,698,575 |
Length | 92 |
Max. P | 0.697764 |
Location | 12,698,483 – 12,698,575 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 80.10 |
Mean single sequence MFE | -30.83 |
Consensus MFE | -21.54 |
Energy contribution | -20.77 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.25 |
Mean z-score | -1.43 |
Structure conservation index | 0.70 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697764 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12698483 92 + 22407834 AUCAUCCGCAUUCCACUCCUUCGCAAGUCGAUUGCGGUUUCGAGGCUGUCGAACAGCCGGCGGCAAUUAUAAAUGUGGAAGCGGCCAAGGCG ......(((.((((((....((((((.....)))))).......(((((((......)))))))..........)))))))))((....)). ( -32.80) >DroPse_CAF1 3150 89 + 1 CCAAUCCCAAUGCGCGUCCUCCCAAUAUUGAUUGUGGCCUCGAGGCUGUCGAGCAGCCGGCGGCCAUCAUUAAUGUGGAA---AUCAAGGAA ................((((.(((.(((((((.((((((.(..(((((.....))))).).)))))).))))))))))..---....)))). ( -30.80) >DroSec_CAF1 2211 92 + 1 AUCAUCCACAUUCCACUCCUUCUCAAGUCGAUUGCGGCUUCGAGGCUGUCGAACAGCCGGCGGCAAUUAUAAAUGUGGAGGCGGCCAAGGCA ....((((((((.........(((((((((....)))))).)))(((((((......))))))).......))))))))....((....)). ( -32.80) >DroEre_CAF1 2186 89 + 1 AUCAUCCCCAUUCCGCUCCUUCGCAAGUCGAUUGCGGCUUCGAGGCUGUGGAGCAGCCGGCGGCAAUUAUAAACGUGGAG---CCCAAGGCG ....(((.(.((((((..(((((.((((((....)))))))))))..))))))..(((...)))..........).)))(---((...))). ( -30.40) >DroYak_CAF1 2219 89 + 1 AUCAUCCCCAUUCCACUCCUUCGCAAGUCGAUUGCGGUUUUGAGGCUGUGGAGCAGCCGGCGGCAAUUAUAAAUGUGGAG---CCCAAGGCG ...........(((((.....(....)..((((((.(((....(((((.....)))))))).))))))......)))))(---((...))). ( -27.40) >DroPer_CAF1 3151 89 + 1 CCAAUCCCAAUGCGCGUCCUCCCAAUAUUGAUUGUGGCCUCGAGGCUGUCGAGCAGCCGGCGGCCAUCAUUAAUGUGGAA---AUCAAGGAA ................((((.(((.(((((((.((((((.(..(((((.....))))).).)))))).))))))))))..---....)))). ( -30.80) >consensus AUCAUCCCCAUUCCACUCCUUCGCAAGUCGAUUGCGGCUUCGAGGCUGUCGAGCAGCCGGCGGCAAUUAUAAAUGUGGAA___ACCAAGGCA .................(((.........((((((.(((....(((((.....)))))))).)))))).......(((......)))))).. (-21.54 = -20.77 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:18 2006