Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,697,175 – 12,697,271 |
Length | 96 |
Max. P | 0.734476 |
Location | 12,697,175 – 12,697,271 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 84.95 |
Mean single sequence MFE | -30.98 |
Consensus MFE | -24.12 |
Energy contribution | -23.88 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.36 |
Mean z-score | -2.29 |
Structure conservation index | 0.78 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734476 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12697175 96 - 22407834 AUGACCAUCACCAACUGGUUUAAUUGGUCCGUAAAGGAUUUAAGCAAUGAGUCCCAUGCGA---GACCCAAGUUGAUUCCGGGAUUCGACCAGUUGGAU ..........((((((((((.((((((((((((..(((((((.....)))))))..)))).---))))....(((....))))))).)))))))))).. ( -33.90) >DroSec_CAF1 902 96 - 1 AUGACCAUCGCCAACUGGUUUAAUUGGUCCGUUACGGAUUUAAGCAAUGAGUCCCAUGCGA---GACCCAAGUUGAUUCCGGGAUUCGACCAGUUGGAU ..........((((((((((.(((((((((((...(((((((.....)))))))...))).---))))....(((....))))))).)))))))))).. ( -32.50) >DroSim_CAF1 896 96 - 1 AUGACCAUCACCAACUGGUUUAAUUGGUCCGUUAAGGAUUUAAGCAAUGAGUCCCAUGCGA---GACCCAAGUUGAUUCCGGGAUUCGACCAGUUGGAU ..........((((((((((.(((((((((((...(((((((.....)))))))...))).---))))....(((....))))))).)))))))))).. ( -32.80) >DroEre_CAF1 877 96 - 1 AUGACCAUCGCCAACUGGUAUAAUUGGUCCGUUGCCGAUUCUAGCAAUGAGUCCUAUGCCA---GACCCAAGUUGAUUCCGGGAUUCGACCAGUUGGAU ..........(((((((((..(((((((.....))))))).......((((((((......---(((....)))......))))))))))))))))).. ( -30.30) >DroYak_CAF1 921 96 - 1 AUGACCAUCACCAACUGGUAUAAUUGGUCCGUUAAGGAUUUUAGCAAUGAGUCCCAUGCCA---GACCCAAGUUGAUUCCGGGAUUCGACCAGUUGGAU ..........(((((((((......(((((.....))))).......((((((((......---(((....)))......))))))))))))))))).. ( -31.80) >DroAna_CAF1 1283 99 - 1 AUGACCAUCACCAACUGGUCCAAGUGGAAUGGUGUUGCCUCCAACAACGAUAUUCAGAAGAUCCGGCCCAAGGUGAUUCAGGGUUUCGAUCGUUUGGAU ..(((((........)))))....((((..((.....))))))........(((((((.((((.(((((...........)))))..)))).))))))) ( -24.60) >consensus AUGACCAUCACCAACUGGUUUAAUUGGUCCGUUAAGGAUUUAAGCAAUGAGUCCCAUGCGA___GACCCAAGUUGAUUCCGGGAUUCGACCAGUUGGAU ..........(((((((((......(((((.....))))).......((((((((.........................))))))))))))))))).. (-24.12 = -23.88 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:17 2006