Locus 4414

Sequence ID 2L_DroMel_CAF1
Location 12,696,871 – 12,696,978
Length 107
Max. P 0.749556
window6952

overview

Window 2

Location 12,696,871 – 12,696,978
Length 107
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 81.87
Mean single sequence MFE -38.07
Consensus MFE -25.62
Energy contribution -28.07
Covariance contribution 2.45
Combinations/Pair 1.21
Mean z-score -2.02
Structure conservation index 0.67
SVM decision value 0.47
SVM RNA-class probability 0.749556
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12696871 107 - 22407834
UAAUGCGUUUCAGUUCCGGAGCAGACCUGUGCCCGAUUUCGAGCGAUCUCAUCGUCGUUUGGAAAGGCGCAAGCUGUACCUGAACUCUCUGCAAACGGUGACGAAGC
...((((....(((((.((.((((.(.((((((...(((((((((((......))))))))))).)))))).))))).)).)))))...))))..((....)).... ( -41.50)
>DroSec_CAF1 607 107 - 1
UAAUGCGUUCCAGUUCCGGAGCAGACCUGUGCCCGAUUUCGAGCGAUCUCAUCGUCGUUUGGAAAGGCGCAGGCUGUACCUGAACUCUCUGCAAACGGUGACGAAGC
...((((....(((((.((.((((.((((((((...(((((((((((......))))))))))).)))))))))))).)).)))))...))))..((....)).... ( -48.00)
>DroSim_CAF1 607 107 - 1
UAAUGCGUUCCAGUUUCGGAGCAGACCUGUGCCCGAUUUCGAGCGAUCUCAUCGUCGUUUGGAAAGGCGCAGGCUGUACCUGAACUCUCUGCAAACGGUGACGAAGC
...((((....(((((.((.((((.((((((((...(((((((((((......))))))))))).)))))))))))).)).)))))...))))..((....)).... ( -46.20)
>DroEre_CAF1 576 107 - 1
AAAUGCGUUCCAGUUCCGAAGCAGACCUGUGCCCGAUUUUGAGCGAUCUCAUCGGCGAUUGGAAAGGCGCCGGUUGUACCUGAACUCUCUGCAAAAGGUGACCAAGC
....((.((((((((((((.(((......))).......((((....)))))))).)))))))).((((((..(((((...(....)..)))))..)))).))..)) ( -31.00)
>DroYak_CAF1 617 107 - 1
AAAUGCGUUUCAGUUCCGGAGCAGACCUGUGCCCGAUUUUGAGCGAUCUCAUCGGCAAUUGGAAAGGCGCCGGCUGUACCUGAACUCUCUGCAAAAGCUGACGAAGC
......((((((((((.((.((((.((.(((((...(((..(.((((...))))....)..))).))))).)))))).)).))))).((.((....)).)).))))) ( -33.10)
>DroAna_CAF1 973 101 - 1
CAAUACGU------UUCGCAGUCGUCCGAUUCCCGAUUUCCAGAAGUGCCACAAGCGCCUGGAAAAACGUCGGGCUUAUUUGAAUUCCUUGAAGACGGUGACCAAAC
........------.((((.((((((((((......(((((((..((((.....)))))))))))...)))))))...((..(.....)..))))).))))...... ( -28.60)
>consensus
UAAUGCGUUCCAGUUCCGGAGCAGACCUGUGCCCGAUUUCGAGCGAUCUCAUCGGCGUUUGGAAAGGCGCAGGCUGUACCUGAACUCUCUGCAAACGGUGACGAAGC
...((((....(((((.((.((((.((((((((...(((((((((..........))))))))).)))))))))))).)).)))))...))))...(....)..... (-25.62 = -28.07 +   2.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:16 2006