Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,694,646 – 12,694,738 |
Length | 92 |
Max. P | 0.562458 |
Location | 12,694,646 – 12,694,738 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 80.35 |
Mean single sequence MFE | -23.75 |
Consensus MFE | -13.81 |
Energy contribution | -14.20 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.12 |
Mean z-score | -1.75 |
Structure conservation index | 0.58 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562458 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12694646 92 - 22407834 CAAGGACAUUUCCAUCGACAUUACGCUGAAUGUCCAGGC------GGGCACCCCACCGACCACCUCGGACACGGC-CACCUCGUCCACAUACAACAAUG ...((((.........((((((......))))))..(((------(((...))).((((.....)))).....))-).....))))............. ( -25.10) >DroPse_CAF1 344 89 - 1 UAAGGACAUAUCCAUAGAUAUCACUCUGAAUGUGCAGGCGCA---GGGAAG---UCCCACGACAACGGA---GGC-CACCUCGUCCACAUACAACAAUG ...(((((((((....)))))..(((((..((((....))))---(((...---.))).......))))---)..-......))))............. ( -23.60) >DroSim_CAF1 351 93 - 1 CAAGGACAUUUCCAUCGACAUCACGCUGAAUGUCCAGGC------GGGCACCCCACCCACCACCUCGGACACGGGCCACCUCGUCCACAUACAACAAUG ...(((((((..((.((......)).))))))))).((.------(((.......))).)).....((((..((....))..))))............. ( -25.40) >DroYak_CAF1 361 92 - 1 CAAGGACAUUUCCAUCGACAUCACUCUGAAUGUUCAGGC------GGGUACCCCACCCACCACAUCGGACACGGC-CACCACGUCCACAUAUAACAAUG ...((((.........((((((.....).)))))..(((------((((.....)))).((.....)).....))-).....))))............. ( -20.60) >DroAna_CAF1 330 98 - 1 UAAGGACAUAUCCAUCGACAUCACGCUGAAUGUGCAGGCUCAGGGCGGAACUCCUCCCACAACAUCGGAUGGAGG-CACUUCAUCCAGUUACAACAACG ....(.(((((.((.((......)).)).)))))).((((..(((.((....)).)))........((((((((.-..))))))))))))......... ( -24.20) >DroPer_CAF1 344 89 - 1 UAAGGACAUAUCCAUAGAUAUCACUCUGAAUGUGCAGGCGCA---GGGAAG---UCCCACGACAACGGA---GGC-CACCUCGUCCACAUACAACAAUG ...(((((((((....)))))..(((((..((((....))))---(((...---.))).......))))---)..-......))))............. ( -23.60) >consensus CAAGGACAUAUCCAUCGACAUCACGCUGAAUGUGCAGGC______GGGAACCCCACCCACCACAUCGGACACGGC_CACCUCGUCCACAUACAACAAUG ...((((...(((............(((......)))........((((.....))))........)))...((....))..))))............. (-13.81 = -14.20 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:13 2006