Locus 4411

Sequence ID 2L_DroMel_CAF1
Location 12,693,081 – 12,693,177
Length 96
Max. P 0.500000
window6948

overview

Window 8

Location 12,693,081 – 12,693,177
Length 96
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 80.13
Mean single sequence MFE -35.22
Consensus MFE -20.42
Energy contribution -21.28
Covariance contribution 0.87
Combinations/Pair 1.41
Mean z-score -1.65
Structure conservation index 0.58
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12693081 96 - 22407834
UACAAGCUGUACUCGAUGCCCAUUUCUAGGGCGUGGUCCACGUCCGAGGCCUCGUGGCUGCAGCC---GCCGUGAUCGUGAGAGUGUCCGUGCGGCAUU---
.....(((((((...((((((.......))))))((..(((.(((((.((...(((((....)))---)).))..))).))..))).)))))))))...--- ( -37.30)
>DroVir_CAF1 1 98 - 1
UACAAACUGUAUUCGAUGCCCAUUUCCAGUGCAUUGUCGAUAUCGGUGGCCUCGUGGCUGCAGCCAUGUCCAUGCCCGUGCGAGUGUCCGUGCGGCAU----
.....((((((((((((((.(.......).))))))..)))).))))((...((((((....)))))).))(((((.(..((......))..))))))---- ( -31.80)
>DroGri_CAF1 1 102 - 1
UACAAACUGUAUUCGAUGCCCAUUUCGAGGGCAUUGUCGAUAUCGGUUGCCUCAUGGCUGCAGCCAUGGCCAUGAUCGUGCGAGUGACCGUGCGGCAUUAUG
....(((((((((((((((((.......))))))))..)))).)))))(((((((((((........))))))))..(..((......))..))))...... ( -39.90)
>DroWil_CAF1 1 100 - 1
UAUAGGCUAUAUUCGAUGCCCAUUUCCAAGGCAUGAUCCACAUCCGUGGCUUCAUGGCCACAUCCUUGGCCAUGAGAGUGCGAAUGUCCGUGUGGCAUGA--
.....(((((((((.(((((.........)))))))...((((.((((..((((((((((......))))))))))..)))).))))..)))))))....-- ( -34.90)
>DroMoj_CAF1 1 102 - 1
UACAAACUGUAUUCGAUGCCCAUUUCCAGUGCAUUGUCGACAUCGGUUGCCUCGUGGCUGCAACCGCGGCCAUGAUCAUGCGAGUGUCCGUGUGGCAUUUUU
....(((((...((((((..(((.....)))...))))))...)))))(((((((((((((....))))))))))..(((((......))))))))...... ( -33.50)
>DroPer_CAF1 1 99 - 1
UACAAACUGUAUUCGAUGCCCAUUUCCAAGGCAUGGUCCACAUCGGUUGCCUCGUGGCCACAGCC---ACCGUGAUCGUGGGAAUGUCCAUGCGGCAUUAUU
..............(((((((........)(((((((((.((.((((..(...(((((....)))---)).)..)))))))))....))))))))))))... ( -33.90)
>consensus
UACAAACUGUAUUCGAUGCCCAUUUCCAGGGCAUGGUCCACAUCGGUGGCCUCGUGGCUGCAGCC_UGGCCAUGAUCGUGCGAGUGUCCGUGCGGCAUUA__
.......(((...(.((((((.......)))))).)...)))......((((((((((((......)))))))))..(((((......))))))))...... (-20.42 = -21.28 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:12 2006