Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,692,514 – 12,692,604 |
Length | 90 |
Max. P | 0.721506 |
Location | 12,692,514 – 12,692,604 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 74.93 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -9.22 |
Energy contribution | -8.72 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.17 |
Mean z-score | -2.28 |
Structure conservation index | 0.35 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.721506 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12692514 90 - 22407834 GCAUCAGAAUUUCCGG-CCAAAUGGCCUAUUGAA--AAAGCAGUUG-GAUGCCGGCUG--UCUGGAAACUUCUUGGGCGGAAGAAGAAGAAG-AGCG ((.......(((((((-((....)))).......--...(((((((-(...)))))))--)..)))))((((((...(....)...))))))-.)). ( -31.60) >DroPse_CAF1 89956 85 - 1 GGUA---AAUUUCCAUGGAUAAUGCC-U-UUGAAAAAACGCAGUUG-GACGCCGGCUGCGUCUGGAAAUUUCUUUG-----AGAAGAAGAAG-AGCA .((.---..((((((.((......))-.-........(((((((((-(...)))))))))).))))))(((((((.-----....)))))))-.)). ( -24.20) >DroSec_CAF1 1880 90 - 1 GCAUCAGGAUUUCCGG-CCAAAUGGCCUAUUGAA--AAAGCAGUUG-GAUGCCGGCUG--UCUGGAAACUUCUUAGGCGGAAGAAGAAGAAG-AGCG ((.......(((((((-((....)))).......--...(((((((-(...)))))))--)..)))))((((((...(....)...))))))-.)). ( -32.70) >DroYak_CAF1 1926 91 - 1 GCACCAGAGUUUCUGG-CCAAAUGGUCUAUUGAA--AAAGCAGUUG-GAUGCCGGCUG--UCUGGAAACUUCUUGGGCGGAAGAAGAAGAAGAAGCG ((.(((((.((((.((-((....))))....)))--)...((((((-(...)))))))--)))))...((((((...(....)...))))))..)). ( -31.10) >DroAna_CAF1 1769 85 - 1 GCACCA---UUUGCAUUCAAAAUGGCUUAAGAAA--AUAUCAGUUGCGGUGCCGGCUG--UCUGGAAACUUCUUACGCG----AAGAAGAAG-AGAG ((.(((---(((.......))))))..((((((.--...((((..(((((....))))--)))))....)))))).)).----.........-.... ( -16.90) >DroPer_CAF1 90240 85 - 1 GGUA---AAUUUUCAUGGAUAAUGCC-U-UUGAAAAAACGCAGUUG-GACGCCGGCUGCGUCUGGAAAUUUCUUUG-----AGAAGAAGAAG-AGCA ....---..((((((.((......))-.-.)))))).(((((((((-(...)))))))))).......(((((((.-----....)))))))-.... ( -23.10) >consensus GCAACA_AAUUUCCAG_CAAAAUGGCCUAUUGAA__AAAGCAGUUG_GAUGCCGGCUG__UCUGGAAACUUCUUAGGCG__AGAAGAAGAAG_AGCG .......................................((..........((((......))))...((((((.........)))))).....)). ( -9.22 = -8.72 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:11 2006