| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,309,161 – 1,309,265 |
| Length | 104 |
| Max. P | 0.805413 |
| Location | 1,309,161 – 1,309,265 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 78.27 |
| Mean single sequence MFE | -15.89 |
| Consensus MFE | -11.58 |
| Energy contribution | -11.47 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.805413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1309161 104 + 22407834 A-AAAAAACAGCAGAAA---AUA-AGAUGGA----GGGGA--ACAAAG--UGUGCAGCAAAUUGAAAACCCAAUUGAAAAGUUAUUGAAAUUGCACAAUAAUUUCUUGAAUUGCAUG .-........((((...---...-.......----(((..--.(((..--((.....))..)))....)))..(..(.(((((((((........))))))))).)..).))))... ( -17.60) >DroVir_CAF1 126175 97 + 1 --------UAA-----G---AUA-AGAUAAAGUUCGGCGA--AAAAAGUGUAUGCAGAAAAUGGAAAACCCAAUUGA-AAGUUAUUGAAAUUGCACAAUAAUUUCUUCAAUUGCAUG --------...-----.---...-................--........(((((((....(((.....))).((((-(((((((((........))))))))..)))))))))))) ( -14.60) >DroWil_CAF1 97872 102 + 1 AGGAGACAGAGCA--A----AGA--AAUCGA----AGAAAAGAUAAAG--UGUGCAGCAAAUUGAAAACCCAAUUGA-AAGUUAUUGAAAUUGCACAAUAAUUUCUUGAAUUGCAUG .(....)...(((--.----...--.(((..----......)))....--..))).((((((((......)))))..-(((((((((........))))))))).......)))... ( -15.30) >DroYak_CAF1 70387 107 + 1 A-AAAAAACAGCAGAGGAAGAUA-AGAUGGA----GGGGA--ACAAAG--UGUGCAGCAAAUUGAAAACCCAAUUGAAAAGUUAUUGAAAUUGCACAAUAAUUUCUUGAAUUGCAUG .-........((((.........-.......----(((..--.(((..--((.....))..)))....)))..(..(.(((((((((........))))))))).)..).))))... ( -17.60) >DroAna_CAF1 93926 108 + 1 A-AAAUAAAAAAUGAAAAACACAAAAAUUUU----AGGGG--GCAAAG--UGUGCAGCAAAUUGAAAACCCAAUUGAAAAGUUAUUGAAAUUGCACAAUAAUUUCUUGAAUUGCAUG .-.........(((.................----.(((.--.(((..--((.....))..)))....)))..(..(.(((((((((........))))))))).)..)....))). ( -14.80) >DroPer_CAF1 100620 98 + 1 A-----AAAAGUAGAA----AGA-AAAUGGA----GACGA--A-AAAG--CGUGCAACAAAUUGAAAACCCAAUUGAAAAGUUAUUGAAAUUGCACAAUAAUUUCUUGAAUUGCAUG .-----....((((.(----(((-((.((..----..)).--.-....--.((((((..(((((......)))))...............)))))).....))))))...))))... ( -15.43) >consensus A_AAAAAAAAGCAGAA____AUA_AAAUGGA____GGGGA__ACAAAG__UGUGCAGCAAAUUGAAAACCCAAUUGAAAAGUUAUUGAAAUUGCACAAUAAUUUCUUGAAUUGCAUG ...................................................((((((..(((((......)))))((.(((((((((........))))))))).))...)))))). (-11.58 = -11.47 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:18 2006