Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,688,229 – 12,688,322 |
Length | 93 |
Max. P | 0.834981 |
Location | 12,688,229 – 12,688,322 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 80.44 |
Mean single sequence MFE | -19.02 |
Consensus MFE | -14.12 |
Energy contribution | -14.78 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.73 |
Structure conservation index | 0.74 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.834981 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12688229 93 - 22407834 GACCGAAAUGCUUAUCAAGAAUAGAAAUGCUGAAGCAAAAGCAUAAAGGAAACUUAAUUUUCGUUAGUCCUGCCAAGUGGCGAGUGAUUAAUG ....(((((((((.((.......))..(((....))).)))))).(((....)))....)))((((((((((((....))).)).))))))). ( -22.60) >DroSec_CAF1 68737 75 - 1 ------------------GAAUAGAAAUGCCAGAGCAAAAGCAUAAAGGAAACUUAAUUUUCGUUAGUCCUGCCAAGUGGCAAGUGAUUAAUG ------------------.....(((((((....)))........(((....)))...))))((((((((((((....))).)).))))))). ( -17.90) >DroSim_CAF1 70713 75 - 1 ------------------GAAUAGAAAUGCCGGAGCAAAAGCAUAAAGGAAACUUAAUUUUCGUUAGUCCUGCCAAGUGGCGAGUGAUUAAUG ------------------.....(((((((....)))........(((....)))...))))((((((((((((....))).)).))))))). ( -17.90) >DroEre_CAF1 70598 93 - 1 CACCGAAAUGAGCAACAAGAAUAGAAAUGCUGCAGCAAAAGCAUAAAGGAAACUUAAUUUUCGUUAGUCCUGCCAAGUGGCGAGUGAUUAAUG ....((((..................(((((........))))).(((....)))...))))((((((((((((....))).)).))))))). ( -21.50) >DroYak_CAF1 71553 93 - 1 CACCGAAGUGAGCAUCAAGAAUAGAAAUGCUGGAGCGAAAGCAUAAAGGAAGCUUAAUUUUCGUUAGUCCUGCCAAGUGGCGAGUGAUUAAUG ....(((.(((((.((.....(((.....)))..((....))......)).)))))...)))((((((((((((....))).)).))))))). ( -24.10) >DroAna_CAF1 60109 86 - 1 CUCCU-----AGGAAC-AGACUAGAAAAA-AAUAGCAAAAGCACAAAAGAAACUUAAUUUUCGUUACUCCUGCCAAGUGAAGAGUGAUUAAUG ...((-----((....-...)))).....-....((....))......((((......))))(((((((............)))))))..... ( -10.10) >consensus CACCG_____AG_A_C_AGAAUAGAAAUGCUGGAGCAAAAGCAUAAAGGAAACUUAAUUUUCGUUAGUCCUGCCAAGUGGCGAGUGAUUAAUG .......................((((.......((....))...(((....)))...))))((((((((((((....))).)).))))))). (-14.12 = -14.78 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:10 2006