Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,684,838 – 12,684,928 |
Length | 90 |
Max. P | 0.827806 |
Location | 12,684,838 – 12,684,928 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 78.39 |
Mean single sequence MFE | -40.55 |
Consensus MFE | -25.54 |
Energy contribution | -26.04 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.22 |
Mean z-score | -1.75 |
Structure conservation index | 0.63 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.827806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12684838 90 - 22407834 ------------AGGAUCCUCCCU---UUGCUGCUGCUUCAUCUGUUGCAGGGCCUGAAACUGCGCUAAGGCUUGCAGUGAGUUCUGCAGCAGGAACUGCGUGGC ------------(((......)))---..((..(.((....(((((((((((((.....(((((((....))..)))))..)))))))))))))....)))..)) ( -34.90) >DroVir_CAF1 168396 102 - 1 --GCUGGCCGUGGG-CAGCUGCUGAUCCCGCUGCUGCUUGAGCUGCUGCAGCGCCUGGAACUGGGCCAGCGCUUGCAGCGAGUUCUGCAGCAGAAACUGUGUCGC --((((.(....).-)))).((.((..(..(((((((..(((((((((((((((.(((.......))))))).)))))).))))).))))))).....)..)))) ( -50.10) >DroPse_CAF1 78924 99 - 1 GUGGUGGAU---GGAGUCCUCGCG---CUGCUGCUGCUUGAGCUGCUGCAGGGCCUGGAACUGUGCCAGGGCCUGCAGGGAGUUCUGCAGCAGGAACUGGGAGGC .........---.....((((.((---.(.(((((((..(((((.(((((((.(((((.......))))).)))))).).))))).))))))).)..)).)))). ( -50.90) >DroEre_CAF1 67351 90 - 1 ------------AGGAUCCUCCCU---CUGCUGCUGCUUCAUCUGCUGCAGGGCCUGAAACUGCGCCAAGGCUUGCAGGGAGUUCUGCAGCAGGAACUGCGUGGC ------------(((......)))---..((..(.((....(((((((((((((((....((((((....))..)))))).)))))))))))))....)))..)) ( -37.00) >DroYak_CAF1 68182 90 - 1 ------------AGGAUCCUCCCU---UUGCUGCUGCUUCAUCUGCUGCAGGGCCUGAAACUGCGCCAGGGCCUGCAGGGAGUUCUGCAGCAGGAACUGCGUGAC ------------(((......)))---((.(((((((....(((.(((((((.((((.........)))).)))))))))).....))))))).))......... ( -38.60) >DroAna_CAF1 57034 90 - 1 ------------GGACUCCUCGCG---UUGCUGCUGUUUCAUCUGCUGGAGAGCCUGAAACUGGGCCAGGGCCUGCAGCGAGUUCUGCAACAGGAACUGGGUGGC ------------...(..(((...---.((((((.((((((...(((....))).)))))).((((....))))))))))((((((......)))))))))..). ( -31.80) >consensus ____________AGGAUCCUCCCG___CUGCUGCUGCUUCAUCUGCUGCAGGGCCUGAAACUGCGCCAGGGCCUGCAGGGAGUUCUGCAGCAGGAACUGCGUGGC ..............................(((((((........(((((((.((((.........)))).)))))))........)))))))............ (-25.54 = -26.04 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:08 2006