Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,674,262 – 12,674,354 |
Length | 92 |
Max. P | 0.664870 |
Location | 12,674,262 – 12,674,354 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 76.86 |
Mean single sequence MFE | -20.39 |
Consensus MFE | -12.29 |
Energy contribution | -12.27 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.12 |
Mean z-score | -1.50 |
Structure conservation index | 0.60 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664870 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12674262 92 + 22407834 GGCUGCCCG-AAAAGGUUGCUUGCGGCAUUCUAAAAAGAAAAAAAAAACCCAACCACAAUUGCAUGAGGU------AACCUUUGACAGGGACACAACA------A ...(((((.-.(((((((((((...(((((((....))))....................)))...))))------)))))))....))).)).....------. ( -20.95) >DroPse_CAF1 65903 86 + 1 -----CACGAAAAAGGUUGCUUGCAGCGCACAA-------CA-CAAAACCGAACCACAAUUGCAUGAGGUAACGGUAACCUUUGACAGGGACACAACU------G -----......(((((((((.....))......-------..-....((((.(((.((......)).)))..)))))))))))..(((........))------) ( -16.60) >DroEre_CAF1 56619 82 + 1 GGCUGCCCG-AAAAGGUUGCUUGCGGCGUUCUAAA----------AAACCGAACCACAAUUGCAUGAGGU------AACCUUUGACAGGGACACAACA------A ...(((((.-.(((((((((((((((.((((....----------.....)))).....)))))...)))------)))))))....))).)).....------. ( -21.80) >DroYak_CAF1 57360 84 + 1 GGCUGCCUG-AAAAGGUUGCUUGCGGCAUUCUAAA--------AAAAACCGAACCACAAUUGCAUGAGGU------AACCUUUGACAGGGACACAACA------A (..(.((((-.(((((((((((...(((.......--------.................)))...))))------)))))))..)))).)..)....------. ( -21.66) >DroAna_CAF1 47477 88 + 1 GGUUGUCUU-GAAAGGUUGCUUGUGGCGGAC---------AA-AAAAACCGAACCACAAUUGCAUGAGGU------AACCUUUGACAGGGACACAACACAAAAAA .((((((((-(((((((((((((((((((..---------..-.....)))..))))).........)))------)))))))..))))...)))))........ ( -24.30) >DroPer_CAF1 65565 86 + 1 -----CACGAAAAAGGUUGCUUGCGGCGCACAA-------CA-CAAAACCGAACCACAAUUGCAUGAGGUAACGGUAACCUUUGACAGGGCCACAACU------G -----......((((((((((..(((.......-------..-.....))).(((.((......)).)))...))))))))))..(((........))------) ( -17.04) >consensus GGCUGCCCG_AAAAGGUUGCUUGCGGCGUACUA________A_AAAAACCGAACCACAAUUGCAUGAGGU______AACCUUUGACAGGGACACAACA______A .....(((...(((((((((.....)).........................(((.((......)).)))......)))))))....)))............... (-12.29 = -12.27 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:02 2006