Locus 4401

Sequence ID 2L_DroMel_CAF1
Location 12,672,763 – 12,672,862
Length 99
Max. P 0.629630
window6935

overview

Window 5

Location 12,672,763 – 12,672,862
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 87.53
Mean single sequence MFE -26.08
Consensus MFE -22.06
Energy contribution -22.12
Covariance contribution 0.06
Combinations/Pair 1.12
Mean z-score -1.69
Structure conservation index 0.85
SVM decision value 0.20
SVM RNA-class probability 0.629630
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12672763 99 + 22407834
UAUUUUCUCGUGAUUUAUAGCGCUGGCUACAAGCUGUCGUGGCAAAACAAUAUUAAAUCCUUGGUAUCUAAGGCCCGCCGACGGCAUUGGAUAUCAUAA
.........(((((...((((....))))((((((((((.(((......(((((((....))))))).....)))...))))))).)))...))))).. ( -25.20)
>DroPse_CAF1 64258 97 + 1
UAUC--UCUCUGAUUUAUAGUUUUUGCUACAAGCUGUCGUGGCAAAACAAUAUUAAAUCCCUGGUAUCUGAGGCCUGCCGAGGGCAUUGGAUAUCAUAA
....--.....((((((((..(((((((((........)))))))))...)).))))))..(((((((..(.((((.....)))).)..)))))))... ( -29.20)
>DroSim_CAF1 54905 99 + 1
UAUUUUCCCGUGAUUUAUAGCGCUGGCUACAAGCUGUCGUGGCAAAACAAUAUUAAAUCCUUGGUAUCUAAGGCCCGCCGACGGCAUUGGAUAUCAUAA
.........(((((...((((....))))((((((((((.(((......(((((((....))))))).....)))...))))))).)))...))))).. ( -25.20)
>DroYak_CAF1 55848 99 + 1
UAUUUUCCUGUGAUUUAUAGCGCUGGCUACAAGCUGUCGUGGCAAAACAAUAUUAAAUCCCUGGUAUCUAAGGCCCGCCGACGGUAUUGGAUAUCAUAA
........((((((...((((....))))((((((((((.(((......((((((......)))))).....)))...))))))).)))...)))))). ( -23.00)
>DroAna_CAF1 45987 99 + 1
AACCCCUCUUUGAUUUAUAGCACAGGCUACAAGCUGUCGUGGCAAAACAAUAUUAAGCCCCUGGUAUCUACGGCCAGCUGAGGGCCUCGGAUAUCAUAA
...(((((.........((((....))))..(((((((((((.......((((((......)))))))))))).))))))))))............... ( -24.71)
>DroPer_CAF1 63898 97 + 1
UAUC--UCUCUGAUUUAUAGUUUUUGCUACAAGCUGUCGUGGCAAAACAAUAUUAAAUCCCUGGUAUCUGAGGCCUGCCGAGGGCAUUGGAUAUCAUAA
....--.....((((((((..(((((((((........)))))))))...)).))))))..(((((((..(.((((.....)))).)..)))))))... ( -29.20)
>consensus
UAUCUUCCUGUGAUUUAUAGCGCUGGCUACAAGCUGUCGUGGCAAAACAAUAUUAAAUCCCUGGUAUCUAAGGCCCGCCGACGGCAUUGGAUAUCAUAA
...........((((((........(((((........)))))..........))))))..((((((((((.(((.......))).))))))))))... (-22.06 = -22.12 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:00 2006