Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,653,249 – 12,653,342 |
Length | 93 |
Max. P | 0.831860 |
Location | 12,653,249 – 12,653,342 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 91.15 |
Mean single sequence MFE | -23.69 |
Consensus MFE | -19.53 |
Energy contribution | -20.37 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.04 |
Mean z-score | -2.35 |
Structure conservation index | 0.82 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.831860 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12653249 93 + 22407834 AGUUUUGCAACAUUUUCUGCACAUUUGUGCAGUUUUUCAUGUUCCAUG--CUCUCAUGUGCACCAGCCAGGAUAUGAAAAUUUUCCAAGCGCAAU ....((((........((((((....)))))).(((((((((((((((--....)))).((....))..)))))))))))..........)))). ( -24.30) >DroPse_CAF1 41813 94 + 1 AGUUUUGCAACAUUUUCUGC-CAUUUGUGCAGUUUUUCAUGUUCCAUGGCUUCUCGUGUGCCAUGGCUGGGAUAUGAAAAUUUUCCAAGCGCACU .....(((........((((-(....).)))).(((((((((((((((((.........)))))))....))))))))))..........))).. ( -26.20) >DroEre_CAF1 34437 93 + 1 AGUUUUGCAACAUUUUCUGCACAUUUGUGCAGUUUUUCAUGUUCCAUG--CUCUCAUGUGCACCAGCCAGGAUAUGAAAAUUUUCCAAGCGCAAU ....((((........((((((....)))))).(((((((((((((((--....)))).((....))..)))))))))))..........)))). ( -24.30) >DroYak_CAF1 35691 93 + 1 AGCUUUGCAACAUUUUCUGCACAUUUGUGCAGUUUUUCAUGUUCCCUG--CUCUCAUGUGCACCAGCCAGGAUAUGAAAAUUUUCCAAGCGCAAU ....((((.........(((((((..(.((((.............)))--).)..)))))))...((..(((.((....))..)))..)))))). ( -23.62) >DroAna_CAF1 27772 92 + 1 AGU-UUGCAACAUUUUCUGCACAUUUUUGCAGUUUUUCAUGCUCCAAG--CUCUCAUGUGCACUGGCCAGGAUAUGAAAAUUUUCCAAGCGCAAU .((-(((.........(((((......))))).((((((((.(((..(--((............)))..))))))))))).....)))))..... ( -19.80) >DroPer_CAF1 41532 94 + 1 AGUUUUGCAACAUUUUCUGC-CAUUUGUGCAGUUUUUCAUGUUCCAUGGCUUCUCGUGUGCCCUGGCUGGGAUAUGAAAAUUUUCCAAGCGCACU .....(((........((((-(....).)))).(((((((((((((.(((.........))).....)))))))))))))..........))).. ( -23.90) >consensus AGUUUUGCAACAUUUUCUGCACAUUUGUGCAGUUUUUCAUGUUCCAUG__CUCUCAUGUGCACCAGCCAGGAUAUGAAAAUUUUCCAAGCGCAAU .....(((........((((((....)))))).(((((((((((((((......)))).((....))..)))))))))))..........))).. (-19.53 = -20.37 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:54 2006