Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,642,090 – 12,642,243 |
Length | 153 |
Max. P | 0.867171 |
Location | 12,642,090 – 12,642,203 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 93.51 |
Mean single sequence MFE | -24.42 |
Consensus MFE | -19.73 |
Energy contribution | -20.85 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.06 |
Mean z-score | -2.36 |
Structure conservation index | 0.81 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861291 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12642090 113 + 22407834 UGGGGUUUUCAUAUUUUUCGAAUAUUUACCAUCGAUUAUGUGGUUAAUUUUCCAUUGAUAUUCAGGCACAUAAAGUUUCCGACCUGUUCAUAAAUUUUUAUGAACAUUUUAAA ..(((((...(((((..(.(((.(((.(((((.......))))).))).))).)..)))))...((.((.....))..)))))))((((((((....))))))))........ ( -20.30) >DroSec_CAF1 23172 113 + 1 UGGGGUUUUCAUAUUUUUGGAAUAUUUACCAUCGAUUAUAUGGUUAAUUUUCCAUUGAUAUUCAGGCUCAUAAAGUUUCGGACCUGUUCAUAAAUGUUUAUGAAAAUUUUUAA .((((((((((((....(((((.(((.(((((.......))))).))).))))).(((....((((..(..........)..)))).)))........))))))))))))... ( -24.70) >DroSim_CAF1 23892 113 + 1 UCGGGUUUUCAUAUUUUUGGAAUAUUUACCAUCGAUUAUGUGGUUAAUUUUCCAUUGAUAUUCAGGCUCAUAAAGUUUCCGACCUGUUCAUAAAUGUUUAUGAACAUUUUUAA ..((((((..(((((..(((((.(((.(((((.......))))).))).)))))..)))))..))))))...............(((((((((....)))))))))....... ( -28.80) >DroYak_CAF1 23945 112 + 1 UGGGGUUUUCAUAUU-UUGGAAUAUUUACCGUCGAUUAUGUGCUUAAUUUUCCAUUGAUAUUCCGGGUCAUAAAAUUUCCGACCUGUUCAUAAAUUUUUAUGAACAUUUUAAA .(..(((((.((..(-((((((((((....(..(((((......)))))..)....)))))))))))..)))))))..).....(((((((((....)))))))))....... ( -23.90) >consensus UGGGGUUUUCAUAUUUUUGGAAUAUUUACCAUCGAUUAUGUGGUUAAUUUUCCAUUGAUAUUCAGGCUCAUAAAGUUUCCGACCUGUUCAUAAAUGUUUAUGAACAUUUUAAA ..((((((..(((((..(((((.(((.(((((.......))))).))).)))))..)))))..))))))...............(((((((((....)))))))))....... (-19.73 = -20.85 + 1.12)
Location | 12,642,129 – 12,642,243 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 86.01 |
Mean single sequence MFE | -19.62 |
Consensus MFE | -14.15 |
Energy contribution | -15.28 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.15 |
Mean z-score | -2.13 |
Structure conservation index | 0.72 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.867171 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12642129 114 - 22407834 UCGCAAGGAAACGAGACAGCUUCAUAAACAUAAAUAAGUUUUUAAAAUGUUCAUAAAAAUUUAUGAACAGGUCGGAAACUUUAUGUGCCUGAAUAUCAAUGGAAAAUUAACCAC ......(....)........((((...((((((...((((((..(..(((((((((....)))))))))..)..))))))))))))...))))......(((........))). ( -24.90) >DroSec_CAF1 23211 110 - 1 ----AAGAAGACAAGAUAGCCUUAUAAACAUAAAUAAGUUUUAAAAAUUUUCAUAAACAUUUAUGAACAGGUCCGAAACUUUAUGAGCCUGAAUAUCAAUGGAAAAUUAACCAU ----..........((((..(((((........)))))...........(((((((....)))))))((((..((........))..))))..)))).((((........)))) ( -15.60) >DroSim_CAF1 23931 110 - 1 ----AAGAAGACAAGAUAGCCUUAUAAACAUAAAUAAGUUUUAAAAAUGUUCAUAAACAUUUAUGAACAGGUCGGAAACUUUAUGAGCCUGAAUAUCAAUGGAAAAUUAACCAC ----............(((.(((((((.........((((((..(..(((((((((....)))))))))..)..))))))))))))).)))........(((........))). ( -19.90) >DroYak_CAF1 23983 104 - 1 ----AAGGCGUAAAGAU------AUAAAGAUAUAUAAGUUUUUAAAAUGUUCAUAAAAAUUUAUGAACAGGUCGGAAAUUUUAUGACCCGGAAUAUCAAUGGAAAAUUAAGCAC ----..((((((((.((------(((....)))))..(((((..(..(((((((((....)))))))))..)..))))))))))).)).......................... ( -18.10) >consensus ____AAGAAGACAAGAUAGCCUUAUAAACAUAAAUAAGUUUUAAAAAUGUUCAUAAAAAUUUAUGAACAGGUCGGAAACUUUAUGAGCCUGAAUAUCAAUGGAAAAUUAACCAC ................(((.(((((((.........((((((..(..(((((((((....)))))))))..)..))))))))))))).)))....................... (-14.15 = -15.28 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:51 2006