Locus 4394

Sequence ID 2L_DroMel_CAF1
Location 12,640,540 – 12,640,646
Length 106
Max. P 0.892263
window6924

overview

Window 4

Location 12,640,540 – 12,640,646
Length 106
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 92.86
Mean single sequence MFE -34.22
Consensus MFE -29.24
Energy contribution -28.92
Covariance contribution -0.32
Combinations/Pair 1.15
Mean z-score -1.56
Structure conservation index 0.85
SVM decision value 0.97
SVM RNA-class probability 0.892263
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12640540 106 - 22407834
CAAC---UGGUCGUCUUGUUGCCAAAGUCACAAUGACAAACUGCUCUCUGGGCGCAGUCAUCCGGCGGUCCAUGGUCCCAUCCUUGGGUCCGCUGCUCCCAUGCUCAUC
....---.....(((((((.((....)).)))).))).....((....((((.(((((.....((....))..((.((((....)))).))))))).)))).))..... ( -31.80)
>DroSec_CAF1 21619 105 - 1
UAAC---UGCUCGUCUUGUUGCCAAAGUCGCAAUGACAAACUGCUCUCUGGGCGCAGUCAUCCGGCGGUCCGUGGUC-CAUCCUUGGGUCCGCUGCUCCCAUGCUCAUC
..((---(((..(((((((.((....)).)))).))).....(((.....))))))))....((((((((((.((..-...)).)))).)))))).............. ( -32.80)
>DroSim_CAF1 22352 105 - 1
UAAC---UGGUCGUCUUGUUGCCAAAGUCACAAUGACAAACUGCUCUCUGGGCGCAGUCAUCCGGCGGUCCAUGGUC-CAUCCUUGGGUCCGCUGCUCCCAUGCUCAUC
....---(((..(((((((.((....)).)))).)))..(((((.(.....).)))))....((((((((((.((..-...)).)))).))))))...)))........ ( -30.70)
>DroEre_CAF1 21698 104 - 1
UAUC---UGGUCGUCUUGUUGCCCAAGUCACAAUGACAAACUGCUCUCUGGGCGCAGUCAUCCAGCGGUCCAA-GUC-CAUCCUUGGGUCCGCUGGUCCCAUGCUCAUC
....---.....(((((((.((....)).)))).))).....(((.....)))(((.....((((((((((((-(..-....)))))).))))))).....)))..... ( -36.00)
>DroYak_CAF1 22270 107 - 1
UAAGUAGUGGUCGUUUUGUUGCCAAAGUCACAAUGACAAACUGCUCUCUGGGCGCAGUCAUCCAGCGGUCCAA-GUC-CAUCCUUGGGACCGCUGGUCCCAUGCUCAUC
..((((((.(((((..(((.((....)).))))))))..))))))...((((((.......((((((((((((-(..-....))).)))))))))).....)))))).. ( -39.80)
>consensus
UAAC___UGGUCGUCUUGUUGCCAAAGUCACAAUGACAAACUGCUCUCUGGGCGCAGUCAUCCGGCGGUCCAUGGUC_CAUCCUUGGGUCCGCUGCUCCCAUGCUCAUC
............(((((((.((....)).)))).))).....(((.....)))(((......((((((((((.((......)).)))).))))))......)))..... (-29.24 = -28.92 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:49 2006