Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,640,110 – 12,640,214 |
Length | 104 |
Max. P | 0.957078 |
Location | 12,640,110 – 12,640,214 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 95.04 |
Mean single sequence MFE | -23.22 |
Consensus MFE | -18.96 |
Energy contribution | -19.96 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.13 |
Structure conservation index | 0.82 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.957078 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12640110 104 - 22407834 UAAAUUGCAUUUAAAAUGCAAUAAUUAUCAUAUUAUGCGCAGGCUGAUAAGCGACGUCAACAUGGGAACAUGAAAAUUAAUUAAUAUUGAUUUUGCAGAUA-------ACU ...(((((((.....)))))))..(((((.(((((.((....))))))).((........((((....))))(((((((((....))))))))))).))))-------).. ( -23.70) >DroSec_CAF1 21182 111 - 1 UAAAUUGCAUUUAAAAUGCAAUAAUUAUCAUAUUAUGCGCAGGCUGAUAAGCGACGUCAACAUGGGAACCUGAAAAUUAAUUAAUAUUGAUUGUGCAGAUAAUGGUUUACU ...(((((((.....)))))))....(((((....((((((((((....)))........((.(....).))..................)))))))....)))))..... ( -21.20) >DroSim_CAF1 21915 111 - 1 UAAAUUGCAUUUAAAAUGCAAUAAUUAUCAUAUUAUGCGCAGGCUGAUAAGCGACGUCAACAUGGGAACAUGAAAAUUAAUUAAUAUUGAUUGUGCAGAUAAUGGUUUACU ...(((((((.....)))))))....(((((....((((((((((....)))........((((....))))..................)))))))....)))))..... ( -25.50) >DroEre_CAF1 21280 110 - 1 UAAAUUGCAUUUAAAAUGCAAUAAUUAUCAUAUUAUGCGCAGGCUGAUAAGCGACGUCAACAUGGGAACAUGAAAAUUAAUUAAUAUUGAUUUU-GAGAUAAUGGUUUACU ...(((((((.....))))))).((((((.......(((...(((....)))..)))...((((....))))(((((((((....)))))))))-..))))))........ ( -22.90) >DroYak_CAF1 21814 110 - 1 UAAAUUGCAUUUAAAAUGCAAUAAUUAUCAUAUUAUGCGCAGUCUGAUAAGCGACGUCAACAUGGGAACAUGAAAAUUAAUUAAUAUUGAUUUU-CAGAUAAUGAUUUACU ...(((((((.....))))))).((((((...(((((....(((........))).....))))).....(((((((((((....)))))))))-))))))))........ ( -22.80) >consensus UAAAUUGCAUUUAAAAUGCAAUAAUUAUCAUAUUAUGCGCAGGCUGAUAAGCGACGUCAACAUGGGAACAUGAAAAUUAAUUAAUAUUGAUUUUGCAGAUAAUGGUUUACU ...(((((((.....))))))).((((((.....((((((..........))).)))...((((....))))(((((((((....)))))))))...))))))........ (-18.96 = -19.96 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:48 2006