Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,633,992 – 12,634,096 |
Length | 104 |
Max. P | 0.921737 |
Location | 12,633,992 – 12,634,096 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 88.92 |
Mean single sequence MFE | -22.33 |
Consensus MFE | -19.70 |
Energy contribution | -19.03 |
Covariance contribution | -0.67 |
Combinations/Pair | 1.12 |
Mean z-score | -1.97 |
Structure conservation index | 0.88 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921737 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12633992 104 - 22407834 AACAACAAUAA--GAACAAGUUGACGACGACACUAAAUGAAUAUUGAUAAAUGGGGCGGUGCUCCAGAAAAAUGGGCGUCGGUGUGUG---AAGUCAAAAAA------AAAAGCU ...........--.......(((((..(((((((..(((..((((......((((((...))))))....))))..))).))))).))---..)))))....------....... ( -22.30) >DroPse_CAF1 16669 110 - 1 AACCACAAUGAGAGAACAAGUUGACGACGACACUAAAUGAAUAUUGAUAAAUGGGGCGGUGCUCCACAAAAGUGGGCGUCAGUGUGUGAAGAAGUCGAAAAAA-----GGUAGCG .(((.((((..(....)..)))).((((.(((((....(..((((....))))...)(..((.((((....))))))..))))))........))))......-----))).... ( -22.40) >DroSec_CAF1 15003 110 - 1 AACAACAAUAA--GAACAAGUUGACGACGACACUAAAUGAAUAUUGAUAAAUGGGGCGGUGCUCCAGAAAAAUGGGCGUCGGUGUGUG---AAGUCAAAAAAAAAAAAAAAAACU ...........--.......(((((..(((((((..(((..((((......((((((...))))))....))))..))).))))).))---..)))))................. ( -22.30) >DroSim_CAF1 15428 106 - 1 AACAACAAUAA--GAACAAGUUGACGACGACACUAAAUGAAUAUUGAUAAAUGGGGCGGUGCUCCAGAAAAAUGGGCGUCGGUGUGUG---AAGUCAAAAAAA----AAAAAACU ...........--.......(((((..(((((((..(((..((((......((((((...))))))....))))..))).))))).))---..))))).....----........ ( -22.30) >DroYak_CAF1 15553 105 - 1 AAC---AAUAA--GAACAAGUUGACGACGACACUAAAUGAAUAUUGAUAAAUGGGGCGGUGCUCCAGAAAAAUGGGCGUCGGUGUGUG---AAGUCAAAAAAAAAA--AAAAACU ...---.....--.......(((((..(((((((..(((..((((......((((((...))))))....))))..))).))))).))---..)))))........--....... ( -22.30) >DroPer_CAF1 16692 110 - 1 AACCACAAUGAGAGAACAAGUUGACGACGACACUAAAUGAAUAUUGAUAAAUGGGGCGGUGCUCCACAAAAGUGGGCGUCAGUGUGUGAAGAAGUCGAAAAAA-----GGUAGCG .(((.((((..(....)..)))).((((.(((((....(..((((....))))...)(..((.((((....))))))..))))))........))))......-----))).... ( -22.40) >consensus AACAACAAUAA__GAACAAGUUGACGACGACACUAAAUGAAUAUUGAUAAAUGGGGCGGUGCUCCAGAAAAAUGGGCGUCGGUGUGUG___AAGUCAAAAAAA_____AAAAACU ....................(((((..(((((((..(((..((((......((((((...))))))....))))..))).))))).)).....)))))................. (-19.70 = -19.03 + -0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:42 2006