Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,305,920 – 1,306,016 |
Length | 96 |
Max. P | 0.755539 |
Location | 1,305,920 – 1,306,016 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 77.24 |
Mean single sequence MFE | -27.75 |
Consensus MFE | -17.76 |
Energy contribution | -17.43 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.15 |
Mean z-score | -1.48 |
Structure conservation index | 0.64 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755539 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1305920 96 + 22407834 AGGCGGUGACUUUUGCGGUG-CCGGGACAAAGGCCAAAAGUGUUUGGCAUGUAACGGAAAUGCGCGGCCAG--GACCACGAAGA-----AGGAAUGGUGGUAAG-------- .((((....)....(((...-(((..(((...((((((....)))))).)))..)))...)))...)))..--.(((((.(...-----.....).)))))...-------- ( -33.00) >DroVir_CAF1 103556 80 + 1 AGGCGCUGACUUUUGCGGUC-UCGGGACAAAGGCCAAAAGUGUUUGGCAUCUAACGGAAAUGCGCGCCCGG--GGACAGUCCG----------------------------- .(((((.(...(((.(((((-....)))....((((((....))))))......)).)))..))))))(((--(.....))))----------------------------- ( -25.00) >DroEre_CAF1 76135 95 + 1 AGGCGGUGACUUUUGCGGUG-CCGGGACAAAGGCCAAAAGUGUUUGGCAUGUAACGGAAAUGCGCGGCCAGGACACCAAGAAGG-----AGGAAUG---GAAAG-------- ..(((....)....(((...-(((..(((...((((((....)))))).)))..)))...)))))..(((...(.((.....))-----.)...))---)....-------- ( -28.70) >DroWil_CAF1 93791 86 + 1 AGGCGGUGACUUUUGCGGUCUUUGGCACAAAGGCCAAAAGUGUUUGGCAUGUAACGGAAAUGCGCGACCAG--CAACCGAAAGG-----ACAA------------------- ....(....)..((((((((((((((......))))))........((((.........))))..)))).)--)))((....))-----....------------------- ( -26.10) >DroYak_CAF1 67104 92 + 1 AGGCGGUGACUUUUGCGGUG-CCGGGACAAAGGCCAAAAGUGUUUGGCAUGUAACGGAAAUGCGCGGCCAG--CAGCACGAAG------UGGAAUG---GAAAG-------- .((((....)....(((...-(((..(((...((((((....)))))).)))..)))...)))...)))..--...(((...)------)).....---.....-------- ( -27.00) >DroAna_CAF1 90678 107 + 1 AGGCGGUGACUUUUGUGGUC-CCGGGACAAAGGCCAAAAGUGUUUGGCAUGUAACGGAAAUGCGCGACCAG-AGACCAGAGAGAGAAAAUGGAAUG---GAAAUGGAAAUGG ..(((..((((.....))))-(((..(((...((((((....)))))).)))..))).....)))..(((.-...(((...........)))..))---)............ ( -26.70) >consensus AGGCGGUGACUUUUGCGGUC_CCGGGACAAAGGCCAAAAGUGUUUGGCAUGUAACGGAAAUGCGCGGCCAG__CACCAGGAAG______AGGAAUG___GAAAG________ .((((........((((....(((..(((...((((((....)))))).)))..)))...)))))).))........................................... (-17.76 = -17.43 + -0.33)
Location | 1,305,920 – 1,306,016 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 77.24 |
Mean single sequence MFE | -21.55 |
Consensus MFE | -13.12 |
Energy contribution | -13.95 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.05 |
Mean z-score | -1.48 |
Structure conservation index | 0.61 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643956 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1305920 96 - 22407834 --------CUUACCACCAUUCCU-----UCUUCGUGGUC--CUGGCCGCGCAUUUCCGUUACAUGCCAAACACUUUUGGCCUUUGUCCCGG-CACCGCAAAAGUCACCGCCU --------...............-----.....(((((.--...)))))((....(((..(((.((((((....))))))...)))..)))-....)).............. ( -22.80) >DroVir_CAF1 103556 80 - 1 -----------------------------CGGACUGUCC--CCGGGCGCGCAUUUCCGUUAGAUGCCAAACACUUUUGGCCUUUGUCCCGA-GACCGCAAAAGUCAGCGCCU -----------------------------(((.......--)))(((((.......((.((((.((((((....)))))).))))...)).-(((.......))).))))). ( -23.30) >DroEre_CAF1 76135 95 - 1 --------CUUUC---CAUUCCU-----CCUUCUUGGUGUCCUGGCCGCGCAUUUCCGUUACAUGCCAAACACUUUUGGCCUUUGUCCCGG-CACCGCAAAAGUCACCGCCU --------.....---.......-----.......((((...((((.(((.....(((..(((.((((((....))))))...)))..)))-...)))....)))).)))). ( -22.20) >DroWil_CAF1 93791 86 - 1 -------------------UUGU-----CCUUUCGGUUG--CUGGUCGCGCAUUUCCGUUACAUGCCAAACACUUUUGGCCUUUGUGCCAAAGACCGCAAAAGUCACCGCCU -------------------....-----.....((((((--(.(((((.((((.........))))).......((((((......)))))))))))))......))))... ( -20.60) >DroYak_CAF1 67104 92 - 1 --------CUUUC---CAUUCCA------CUUCGUGCUG--CUGGCCGCGCAUUUCCGUUACAUGCCAAACACUUUUGGCCUUUGUCCCGG-CACCGCAAAAGUCACCGCCU --------.....---.......------....(((.((--((((..(((......))).(((.((((((....))))))...))).))))-)).))).............. ( -19.90) >DroAna_CAF1 90678 107 - 1 CCAUUUCCAUUUC---CAUUCCAUUUUCUCUCUCUGGUCU-CUGGUCGCGCAUUUCCGUUACAUGCCAAACACUUUUGGCCUUUGUCCCGG-GACCACAAAAGUCACCGCCU .............---..................((((((-(.((.((((......))).....((((((....))))))....).)).))-)))))............... ( -20.50) >consensus ________CUUUC___CAUUCCU______CUUCCUGGUC__CUGGCCGCGCAUUUCCGUUACAUGCCAAACACUUUUGGCCUUUGUCCCGG_CACCGCAAAAGUCACCGCCU ...........................................(((.(((.....(((..(((.((((((....))))))...)))..)))....)))....(....)))). (-13.12 = -13.95 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:16 2006