Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,633,413 – 12,633,509 |
Length | 96 |
Max. P | 0.659487 |
Location | 12,633,413 – 12,633,509 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 78.74 |
Mean single sequence MFE | -28.92 |
Consensus MFE | -16.99 |
Energy contribution | -17.30 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.21 |
Mean z-score | -1.69 |
Structure conservation index | 0.59 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.659487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12633413 96 + 22407834 GGAAGGGCAUCG---CUUGCGAGGGUGUUUCUG-GCCCCUCGAUUACGUAU--UUCUCCUGGCUAUAUGGUAUCUACUAUCGGUAUCCCUAUCCCUUCGCUU .((((((.....---..((((((((.((.....-)))))))(((..(((((--.((....))..)))))..)))........))).......)))))).... ( -25.74) >DroSec_CAF1 14444 92 + 1 GGGAGGGAACCG---CUUGCGAGGGUGUUUCUG-GCCCCUCGAUUGCGUAU--UUCUCCUGGCUAUGUGGU----ACUAUCAGUAUCCCUAUCCCUUCGCUU (((((..(..((---(...((((((.((.....-))))))))...)))..)--..)))))((.((.(.(((----((.....)))))).)).))........ ( -33.40) >DroSim_CAF1 14870 92 + 1 GGGAGGGCAUCG---CUUGCGAGGGUGUUUCUG-GCCCCUCGAUUACGUGU--UUCUCCUGGCUAUAUGGU----ACUAUCGGUAUCCCUAUCCCUUCGCUU (((((((((.((---....((((((.((.....-))))))))....)))).--)))))))((......(((----((.....)))))......))....... ( -27.40) >DroEre_CAF1 14509 92 + 1 GGGAGGGAACCG---CGUGCGAGGGUGUUUCUC-GCCCCUCGAUUACACAU--UUCUCCUGGAUACAUGGU----ACCAUCGGUAUCCCCAUACCUAUCCCU (((((((((..(---.(((((((((.((.....-))))))))..))).)..--)))))..(((((((((..----..)))..)))))).........)))). ( -30.60) >DroYak_CAF1 14695 92 + 1 GGGAGGGAACCG---CUUGCGAGGGUGUUUCUG-GCCCCUCGAUUACGUAU--UUCUCCCGGUGUUAUGGU----ACUAUAGGUAUCCCUAUUCCUUCGCUU (((((..(..((---....((((((.((.....-))))))))....))..)--..)))))((((....((.----...(((((....))))).))..)))). ( -34.70) >DroAna_CAF1 9330 83 + 1 ----GGGCUACUCAAAAUGCGAGGGUGUUUUUGGGCCCCUCGAUUACAUAUCUUUCUUCUGGUUAU---------ACCACUGGUAUC------CCUUCGCUU ----(((.(((.((.....((((((.(((....))))))))).................(((....---------.))).))))).)------))....... ( -21.70) >consensus GGGAGGGAACCG___CUUGCGAGGGUGUUUCUG_GCCCCUCGAUUACGUAU__UUCUCCUGGCUAUAUGGU____ACUAUCGGUAUCCCUAUCCCUUCGCUU (((((((............((((((.((......))))))))...........)))))))((....((((.....(((...)))....)))).))....... (-16.99 = -17.30 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:41 2006