Locus 4388

Sequence ID 2L_DroMel_CAF1
Location 12,631,224 – 12,631,315
Length 91
Max. P 0.555642
window6915

overview

Window 5

Location 12,631,224 – 12,631,315
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 81.88
Mean single sequence MFE -18.21
Consensus MFE -12.30
Energy contribution -12.50
Covariance contribution 0.20
Combinations/Pair 1.23
Mean z-score -1.49
Structure conservation index 0.68
SVM decision value 0.04
SVM RNA-class probability 0.555642
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12631224 91 + 22407834
GUCCGUGUAGCCACAACACCUACUUCAUUACAGGUUGCGCAAAUAUAAUGCAGACGUGGUAUUCAUGCCUCUUUGAGGUAAUUCCUCAUAA
...((((..(((((...((((..........))))...(((.......)))....)))))...))))......(((((.....)))))... ( -20.10)
>DroSec_CAF1 12338 91 + 1
GUCCGUGUAGCCACAACACCUACUUCAUUACAGGUUGCACAAACAUAAUGCAGACAUGGUAUUCAUGCCUCUUUCAGGUAAUUCCUCAUAA
....((((((((....................))))))))......(((((.......)))))..(((((.....)))))........... ( -15.25)
>DroSim_CAF1 12694 91 + 1
GUCCGUGUAGCCACAACACCUACUUCAUUACAGGUUGCACAAACAUAAUGCAGACGUAGUAUUCAUGCCUCUUUGAGGUAAUUCUUCAUAA
....((((((((....................))))))))......(((((.......)))))..((((((...))))))........... ( -17.55)
>DroEre_CAF1 12372 74 + 1
GACCGUGUAGCCACAACACCUACUUCAUUACAGGUUGCACAGAUAC-----------------CAUGCCUCUUUGAGGUAAUUCCUCAUAA
....((((((((....................))))))))......-----------------..((((((...))))))........... ( -16.65)
>DroYak_CAF1 12533 91 + 1
GACCGUGUGGCCACAACACCUACUUCAUUACAGGUUGCACAGAUAUAAUGCAGUCGGGAUUUUCAUGCCACUUUGAGGUAAUUCCUCAUAA
......(((((.......((.(((.(((((...(((.....))).))))).))).)).........)))))..(((((.....)))))... ( -21.09)
>DroAna_CAF1 7236 88 + 1
CUUCAUGUAGCAGCAACACUUUCUUCAUUACAGGUUGCUAAAAUACAAUGCAA-UAUGAU-UUCAUGCCACUUUGAGGC-AUUCUUCAUAU
.....((((..((((((.((...........))))))))....)))).....(-(((((.-...(((((.......)))-))...)))))) ( -18.60)
>consensus
GUCCGUGUAGCCACAACACCUACUUCAUUACAGGUUGCACAAAUAUAAUGCAGACGUGGUAUUCAUGCCUCUUUGAGGUAAUUCCUCAUAA
....((((((((....................)))))))).................................(((((.....)))))... (-12.30 = -12.50 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:40 2006