Locus 4383

Sequence ID 2L_DroMel_CAF1
Location 12,624,282 – 12,624,397
Length 115
Max. P 0.862790
window6900

overview

Window 0

Location 12,624,282 – 12,624,397
Length 115
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 73.70
Mean single sequence MFE -32.32
Consensus MFE -18.46
Energy contribution -18.43
Covariance contribution -0.03
Combinations/Pair 1.17
Mean z-score -1.71
Structure conservation index 0.57
SVM decision value 0.84
SVM RNA-class probability 0.862790
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12624282 115 - 22407834
AGGAACGAUUUCUUUCUCU-CCUCCUUGGAUGGGCUACGUGCGUCCAUUUGGUAUUCAGAUGAUGUGCAAAUUCGAUUUGUAUGUGUUGUGUGAAUAGCUAUC-GGCAUAGGCGGAG---
.((((.(....).))))((-((.(((..(((((((.......)))))))..)((((((.(..((((((((((...))))))))..))..).))))))((....-.))...)).))))--- ( -32.70)
>DroVir_CAF1 61973 105 - 1
AGAGUAAAUUUCUGU-----------U--A-AGGCUACGUGCGGCCAUUUGCUAUUCAGAUGAUGUGCAAAUUCGAUUUGUAUGUGUUGUGUGAAGAACUGAA-CGCAGUGGCUUAGGCA
((((.....))))((-----------.--.-(((((((.((((..((.((....((((.(..((((((((((...))))))))..))..).)))).)).))..-)))))))))))..)). ( -29.70)
>DroPse_CAF1 5393 101 - 1
AGGAGGAG-----------------CUGGA-GGGCUACGUGCGUCCAUUUGGUAUUCAGAUGAUGUGCAAAUUCGAUUUGUAUGUGUUGUGUGAAUGGCCAAA-AGCAGUGGCGUGGGCG
.......(-----------------((.(.-..(((((.(((.....(((((((((((.(..((((((((((...))))))))..))..).))))).))))))-.)))))))).).))). ( -32.00)
>DroGri_CAF1 24790 104 - 1
AGACUACAUUUUUGU-----------U-----UGCUACGUGCGUCCAUUUGGUAUUCAGAUGAUGUGCAAAUUCGAUUUGUAUGUUUUGUGAGAGGAAGCCAAUAACAGUGGCGUAGUCA
.((((((..(((..(-----------(-----..(.(((((((((.(((((.....))))))))))((((((...))))))))))...)..))..)))((((.......)))))))))). ( -28.90)
>DroAna_CAF1 2 116 - 1
AGGAAUGAUUUCUCCCUCCGUCUCCUUGGACGGGCUACGUGCGUCCAUUUGGUAUUCAGAUGAUGUGCAAAUUCGAUUUGUAUGUGUUGUGUGAAUGGCAUUU-GGCAGAGGUGGAG---
.(((........)))((((..(((..((((((.((...)).))))))..((.((((((.(..((((((((((...))))))))..))..).)))))).))...-....)))..))))--- ( -38.60)
>DroPer_CAF1 5657 101 - 1
AGGAGGAG-----------------CUGGA-GGGCUACGUGCGUCCAUUUGGUAUUCAGAUGAUGUGCAAAUUCGAUUUGUAUGUGUUGUGUGAAUGGCCAAA-GGCAGUGGCGUGGGCG
.......(-----------------((.(.-..(((((.(((.....(((((((((((.(..((((((((((...))))))))..))..).))))).))))))-.)))))))).).))). ( -32.00)
>consensus
AGGAAAAAUUUCU_U___________UGGA_GGGCUACGUGCGUCCAUUUGGUAUUCAGAUGAUGUGCAAAUUCGAUUUGUAUGUGUUGUGUGAAUAGCCAAA_GGCAGUGGCGUAGGC_
.................................(((((.(((...((((((.....))))))((((((((((...))))))))))(((((....)))))......))))))))....... (-18.46 = -18.43 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:27 2006