Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,621,872 – 12,621,968 |
Length | 96 |
Max. P | 0.766806 |
Location | 12,621,872 – 12,621,968 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 88.58 |
Mean single sequence MFE | -28.64 |
Consensus MFE | -20.90 |
Energy contribution | -22.90 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.02 |
Structure conservation index | 0.73 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12621872 96 - 22407834 G------CCGCAUUCGAAAGGUUUUCCAGAAUUUUACAGUUUUUGGCAGAGAAAUUUGCGAAAACCACAGGCGGCCACCCCCAAAAAUUGAGGCGGCCGGGA (------((((.(((((..((((((((((((.........)))))(((((....))))))))))))...((.((....)))).....))))))))))..... ( -33.20) >DroSec_CAF1 2862 99 - 1 GC---AGCAGCAUUCGAAAGGUUUUCCAGAAUUUUACAGUUUUUGGCAGAGAAAUUUGCGAAAACCACAGGCGGCCACCCCCAAAAAUUGAGGCGGCCGAAA ((---....)).(((....((((((((((((.........)))))(((((....))))))))))))...(((.(((...............))).)))))). ( -30.36) >DroSim_CAF1 2893 99 - 1 GC---AGCAGCAUUCGAAAGGUUUUCCAGAAUUUUACAGUUUUUGGCAGAGAAAUUUGCGAAAACCACAGGCGGCCACCCCCAAAAAUUGAGGCGGCCGAAA ((---....)).(((....((((((((((((.........)))))(((((....))))))))))))...(((.(((...............))).)))))). ( -30.36) >DroEre_CAF1 2780 95 - 1 G------CAGCAUUCGAAAGGUUUUCCAGAAUUUUACAGUUUUUGGCACAGAAAUUUGCGAAAACCACAGGCGGCCACCCCCAAAAA-UGAGGCGGCCGUCA .------............((((((((((((.........)))))(((.(....).))))))))))...(((((((.((..((....-)).)).))))))). ( -30.30) >DroYak_CAF1 2923 90 - 1 GCAGCAGCAGCAUUGGAAACGUUUUCCAGAAUUUUACAGUUUUUGGCAGAGAAAUUGGCGAAAACCACAGGCGGCCACCCCCAAAAC-UGA----------- ...((....)).((((((.....)))))).......(((((((((((...(....(((......)))....).)))).....)))))-)).----------- ( -19.00) >consensus GC___AGCAGCAUUCGAAAGGUUUUCCAGAAUUUUACAGUUUUUGGCAGAGAAAUUUGCGAAAACCACAGGCGGCCACCCCCAAAAAUUGAGGCGGCCGAAA ...................((((((((((((.........)))))(((((....)))))))))))).....(((((.((.(........).)).)))))... (-20.90 = -22.90 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:26 2006