Locus 4381

Sequence ID 2L_DroMel_CAF1
Location 12,621,082 – 12,621,183
Length 101
Max. P 0.638018
window6898

overview

Window 8

Location 12,621,082 – 12,621,183
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 89.79
Mean single sequence MFE -22.20
Consensus MFE -15.66
Energy contribution -15.90
Covariance contribution 0.24
Combinations/Pair 1.14
Mean z-score -2.08
Structure conservation index 0.71
SVM decision value 0.22
SVM RNA-class probability 0.638018
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12621082 101 + 22407834
AUAAGCAAACAGUCAACAAGGUUUGUUUACUCUUCAAAGAGCUCAAAAGAGUGCGCAGACCCCAACUUGCAAUUACAUUGCCUUAAAAACUUACAAAAGGC
....((((...(....)..(((((((.(((((((............))))))).))))))).....)))).........(((((............))))) ( -21.30)
>DroSec_CAF1 2080 100 + 1
AUAAGCAAACAGUCAACAAGGUUGGUUGACUCUUCAAAGAGCUCAAAAGAGUGCGCAGACCUCAACUUGCAAUUACAUUGCCUUAAAAACUUACAA-AGGC
....((....(((((((.......))))))).........((((....))))))((((........)))).........(((((...........)-)))) ( -19.70)
>DroSim_CAF1 2104 100 + 1
AUAAGCAAACAGUCAACAAGGUUUGUUGACUCUUUAAAGAGCUUAAAAGAGUGCGCAGACCUCAACUUGCAAUUACAUUGCCUUAAAAACUUACAA-AGGC
....(((...(((.....((((((((..(((((((.((....)).)))))))..))))))))..)))))).........(((((...........)-)))) ( -22.80)
>DroEre_CAF1 2013 101 + 1
AUAGGCAAACAGUCAACAGGGUUUGUUGACUUUUCAAAGAGCUCAAAAGAGUGCGAAAGCCGCAACCUGUGAUUACAUUGCCUUAAAAACUUAAAAAAGGC
..((((((..(((((.((((((((.((((....)))).))))........((((....).)))..)))))))))...)))))).................. ( -26.40)
>DroYak_CAF1 2161 101 + 1
AUAAGCAAACAGUCAACAAGGUUUGUUGACUUUUCAAAGAGCUCCAAGGAGUGCGAACACCGCAAACUGUAAUUACAUGGCCUUAAAAACUUAAGAAAGGC
....(((...((((((((.....)))))))).........((((....))))(((.....)))....))).........(((((............))))) ( -20.80)
>consensus
AUAAGCAAACAGUCAACAAGGUUUGUUGACUCUUCAAAGAGCUCAAAAGAGUGCGCAGACCGCAACUUGCAAUUACAUUGCCUUAAAAACUUACAAAAGGC
....(((...(((((((((...))))))))).......(.((((....)))).).............))).........(((((............))))) (-15.66 = -15.90 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:25 2006