Locus 4380

Sequence ID 2L_DroMel_CAF1
Location 12,614,885 – 12,614,977
Length 92
Max. P 0.885860
window6897

overview

Window 7

Location 12,614,885 – 12,614,977
Length 92
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 83.53
Mean single sequence MFE -29.53
Consensus MFE -21.48
Energy contribution -22.28
Covariance contribution 0.79
Combinations/Pair 1.12
Mean z-score -3.21
Structure conservation index 0.73
SVM decision value 0.94
SVM RNA-class probability 0.885860
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12614885 92 + 22407834
CGCCUCGCAUAUGCAUAUACAUCUCAGGACUC-UGUACUCA-------CUACCUGAGGGUCCUGCCAAUGUAUGUCCUUACUUCUCUGGGGUGUCAAAUA
((((((((....))((((((((..((((((((-((((....-------.)))...)))))))))...))))))))............))))))....... ( -29.40)
>DroSec_CAF1 181600 93 + 1
CGCCUCGCAUAUGCAUAUACAUCUCAGGACUCCCGUACUCA-------CUACCUGAGGGUCCUGCCAAUGUAUGUCCUUACUUCUCUGGGGUGUCAAAUA
((((((((....))((((((((..(((((((((.(((....-------.)))..).))))))))...))))))))............))))))....... ( -28.30)
>DroSim_CAF1 187582 93 + 1
CGCCUCGCAUAUGCAUAUACAUCUCAGGACUCCCGUGCUCA-------CUACCUGAGGGUCCUGCCCAUGUAUGUCCUUACUUCUCUGGGGUGUCAAAUA
((((((((....))((((((((..((((((((.((.(....-------...).)).))))))))...))))))))............))))))....... ( -28.10)
>DroEre_CAF1 179842 90 + 1
CAGCUCGCAUAUGCAUAUACAUCUCAGGACUC-CGCACUCA-------CUACCUGAGGGUCCUGCCAAUGUAUGUCCUUACUU--CUGGGGUGUCAAAUG
((.(((((....))((((((((..(((((((.-....((((-------.....)))))))))))...))))))))........--..))).))....... ( -24.00)
>DroYak_CAF1 186225 97 + 1
CGCCUCGCAUAUGCAUAUACAUCUCAGGACUC-UGUACUCCUGAGGGUCUACCUGAGGGUCCUGCCAAUGUAUGUCCUUACUU--CUGGGGUGUCAAAUG
((((((((....))((((((((..((((((((-((((..((....))..)))...)))))))))...))))))))........--..))))))....... ( -33.50)
>DroAna_CAF1 181268 75 + 1
CGCCUCGUAUAUGCAUA----UCUCAGGACCUCGGUC-----------CUACCUGAGUGUCCU------GUUUGUGCUUAU----UUGGGGUGUCAAAUG
(((((((.(((.(((((----...(((((((((((..-----------....))))).)))))------)..))))).)))----.)))))))....... ( -33.90)
>consensus
CGCCUCGCAUAUGCAUAUACAUCUCAGGACUC_CGUACUCA_______CUACCUGAGGGUCCUGCCAAUGUAUGUCCUUACUU__CUGGGGUGUCAAAUA
((((((((....))((((((((..((((((((........................))))))))...))))))))............))))))....... (-21.48 = -22.28 +   0.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:24 2006