Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,610,877 – 12,610,997 |
Length | 120 |
Max. P | 0.808725 |
Location | 12,610,877 – 12,610,997 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.08 |
Mean single sequence MFE | -36.84 |
Consensus MFE | -18.06 |
Energy contribution | -20.46 |
Covariance contribution | 2.40 |
Combinations/Pair | 1.22 |
Mean z-score | -1.92 |
Structure conservation index | 0.49 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808725 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12610877 120 + 22407834 CAUCCGCAAGGAAAGAUCAUCGACAUCAGUGCGUUUAAAAUUUCUUGUGUUUUGUACGAGAUGUAAUUUCAAUCGGCGUCCAUCCAAACGGACUCCGUGGAACUGCUCGAUGAUCUGGAA ..(((....))).((((((((((...((((............(((((((.....))))))).......((...(((.((((........)))).)))..)))))).)))))))))).... ( -41.10) >DroSec_CAF1 177605 120 + 1 AAUCUGCGAGGAAAGAUCCUCGAUCUCAGGACGUCGGAAAUUGCGUGUAUUUCGUACGAGAUGUAAUUUCAAUCGGCGUCCGUCCAAACGGACUCCGUGGAACUGCCUGAUGAUCUGGAA ..(((..(((((....)))))(((((((((...((.((((((((((((((...))))...))))))))))...(((.((((((....)))))).)))..))....))))).)))).))). ( -44.40) >DroSim_CAF1 181594 120 + 1 AGUCUGCGAGGAAAGAUCCUCGAUCUCAGGACGUCGGAAAUUGCGUGUAUUUCGUACGAGAUGUAAUUUCAAUCGGCGUCCGUCCAAACGGACUCCGUGGAACUGCCUGAUGAUCUGGAA ..(((..(((((....)))))(((((((((...((.((((((((((((((...))))...))))))))))...(((.((((((....)))))).)))..))....))))).)))).))). ( -44.30) >DroEre_CAF1 175930 94 + 1 --------------------------CAGGACGCUUGCAGUUGCGUGUCUUUUGAAUGAGAUGUAUUUUCAAUCGGCGUCCGUCAACAUGAACGCCGUGGAACUGCCUGAUGAUCAUCAU --------------------------((((((((........))))(((((......))))).....(((...((((((.(((....))).))))))..)))...))))........... ( -25.80) >DroYak_CAF1 182159 120 + 1 ACUCUGCAAUGAACGAGAUUCACCAUCAGGGCGUUUGAAAUCGCGUGUUUUUUGUAUGAGAUGUAGCUUCAAUCGGCGUCCGUCCAAAAAGACUCCGUGGAACUGCUUGAUGAUCUUCAU .((((((((.(((((.......((....))(((........))).))))).))))).)))..((((.(((...(((.(((..........))).)))..))))))).(((......))). ( -28.60) >consensus AAUCUGCAAGGAAAGAUCCUCGACAUCAGGACGUUUGAAAUUGCGUGUAUUUUGUACGAGAUGUAAUUUCAAUCGGCGUCCGUCCAAACGGACUCCGUGGAACUGCCUGAUGAUCUGGAA ..(((((.....................(((((((.((((((((((.(..........).))))))))))....)))))))((((....))))...)))))................... (-18.06 = -20.46 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:22 2006